| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1767 |
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| Symbol | |
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| ID | 3960858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1899429 |
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| End bp | 1901579 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637916590 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_523027 |
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| Protein GI | 89900556 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00167565 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAGA CCCACCCGAT TCAATCCGAG AAGCCGCTGC TCCTGCTGGT GGACGATCTG
GCGGCCAATC TGCATGTCCT GGTGGCGGGG CTCAAAGCGG ATTTCCGTCT CAAGACAGCC
ATCAGCGGCG CTTCGGCCCT GGCGCTGCTG GCCCAGCAGG CGGACCAACC GAAACTGGTC
GTGCTCGATG TCAAGATGCC CGGCATGAGC GGCATTGAGG TGCTGCGCCG GATGCGCGAT
GACCCGCATA CCAGCGATAT TCCGGTCATC CTGCTCAGTG CTGACGCATC GGAGCAAAGC
GAAATCGCCG GCCTGCATCT GGGTGCCAAC GACTATCTCG TTAAACCCGT ATCGACCAAC
GTCCTGATCG TGCGGGTGCG CAATCTGATC CAGCGCAATG CCGACCGGAT CCAGCTTCGC
CTGGCCGCGC ATGTCTTCGA GTACAGCGGC GAAGCCATCA TGATTACCGA CCGCGACAAC
CAGATTGTCG ATGTCAATGC CGCCTTCACG ACGTTGACCG GATACCACAA GTCCGAGGTG
CTGAGCAAGA ATCCCAAGTT CCTGTCCTCG GGACGGACCA CGCGGAAAGA GTACCAGGCC
ATGTGGGCAG CCATTCGGAC AGGCGGCTTC TGGCAGGGCG AGTTTTGGGA TCGGCGCAAG
GATGGCAGCG TTTTCCCGAA GATGATGACC GTTTCCGTGG TGCTCGACCG GGCCGGGGAT
ATCGACTTCT ATCTGGCCAA TTTCGTCGAT GTCAGCCACT ACAAGGAAAC CGAACGGCGC
ATCGAACACC TCGCGCACCA CGATACCCTG ACCGGCCTGC CGAACCGGCT GCATTTGCAG
GTGTTCCTCG AGCAATCGAT ATTGATCGCC AAGCGCATGT CAGAACAATT GGCGGTGGTG
TTCCTCGATC TGGACCGTTT CAAGACGATC AACGATACCC TCGGCCATCC GGTCGGAGAT
GACCTGCTGA TCCAGGTGGC AGACCGCCTC AAGACAAGTG TGCGCCAGTA CGACATGGTG
GCAAGGCTGG GTGGCGATGA GTTTGTCATG ATCTTGCGCG GCCATGACAT GCCATCTGTG
GCTTCAGCAG TTGCCGAAAA AATCCGCCTG CATCTCAACC AGCCGTTTCA GATTGGCCAG
CACACCCTGC GCACGGCGAC CAGTATCGGC ATCGCCCTCT ATCCCGGCAA CGGGGAACGC
ATGGACGATC TGATGAAACA TGCCGACACG GCCATGTACT TCACCAAATC GGAAGGGGGT
AACGGGTTCT GTTTCTTTTC ATCGGACATG AATCTGCATG CCCATGAAAA ACTGGAGCTG
GAAAACCTGT TGCACGGGGC GCTGGAAAAT CAGCAATTCG AGTTGTATTA CCAGCCCCAG
CTGTCCCTGC CTGAACAACA GGTGATCGGC GCCGAGGTGT TGTTGCGCTG GCATCATCCG
GAGAAGGGAT TCATTTCGCC AGCGGTGTTC ATCCCCCTGG CAGAAGCTAC CAACCAGATT
GGCGCCATCG GTGAGTGGGT GCTGGAAAAC GCCTGCCGAC AGGCGAGCCA ATGGCTGCGA
GACGGTTTGC CACTGCCGCG GATCGGCGTC AATGTCTCGG GGAGACAGTT CCAGGACAAG
AATCTGTTCA CACTGGTGAA ACGTGTACTA GCGGAAACCG GCTTGCCGGC GGATCGATTG
GAGCTGGAAA TCACCGAAAC GGCGGTGACG GCGTCCCCTG ACGAAGCTGC ACGCCTGCTC
CAGTCCCTGC GCGAATGCGG CATCATGGTC GCGTTGGATG ACTTCGGGCA AGGCTATTCG
TCACTGGGTC AACTCAGGGA CCTGCCCATT GATCGCCTGA AGATCGACGC CGCCTTTGTC
CGCGATATCA CTGATGAACC CGGACACCCG GGCGGCGCCA TTGCCGCTGC CACCATCGGA
CTGGGCCACA ACCTCGGATT CAGTGTGATC GCGGAAGGCG TAGAAACGCA AGCTCAATTG
TCCTTCCTGA TGGCGCATGG CTGTGATGAA GTCCAGGGCT ATTACTTCGC AAAGCCCATG
CCCAGAGAGC AGTTTGAGGC GTTCTTGCGG GCACGGATGG AGGCTGGAAC AGTTGGTCGC
AACTTGCCAC TGACGCCCGA ACCTCGAATG ATTCTTACCG CTGCGAAGTA G
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| Protein sequence | MNETHPIQSE KPLLLLVDDL AANLHVLVAG LKADFRLKTA ISGASALALL AQQADQPKLV
VLDVKMPGMS GIEVLRRMRD DPHTSDIPVI LLSADASEQS EIAGLHLGAN DYLVKPVSTN
VLIVRVRNLI QRNADRIQLR LAAHVFEYSG EAIMITDRDN QIVDVNAAFT TLTGYHKSEV
LSKNPKFLSS GRTTRKEYQA MWAAIRTGGF WQGEFWDRRK DGSVFPKMMT VSVVLDRAGD
IDFYLANFVD VSHYKETERR IEHLAHHDTL TGLPNRLHLQ VFLEQSILIA KRMSEQLAVV
FLDLDRFKTI NDTLGHPVGD DLLIQVADRL KTSVRQYDMV ARLGGDEFVM ILRGHDMPSV
ASAVAEKIRL HLNQPFQIGQ HTLRTATSIG IALYPGNGER MDDLMKHADT AMYFTKSEGG
NGFCFFSSDM NLHAHEKLEL ENLLHGALEN QQFELYYQPQ LSLPEQQVIG AEVLLRWHHP
EKGFISPAVF IPLAEATNQI GAIGEWVLEN ACRQASQWLR DGLPLPRIGV NVSGRQFQDK
NLFTLVKRVL AETGLPADRL ELEITETAVT ASPDEAARLL QSLRECGIMV ALDDFGQGYS
SLGQLRDLPI DRLKIDAAFV RDITDEPGHP GGAIAAATIG LGHNLGFSVI AEGVETQAQL
SFLMAHGCDE VQGYYFAKPM PREQFEAFLR ARMEAGTVGR NLPLTPEPRM ILTAAK
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