Gene Rfer_1739 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1739 
Symbol 
ID3962440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1874317 
End bp1875798 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content58% 
IMG OID637916562 
Productpeptidase S1C, Do 
Protein accessionYP_522999 
Protein GI89900528 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0778272 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCATA TCGATTGGAA GAAGTTGCAT TCTTTTGTTC TCGCCAGTGC TTTTGCTTTG 
ACGGCGTCGG TCGTTCTGGT GCCCGTGTCG CAGGCGATGG CTCAGGTGCG CACCTTGCCG
GACTTTACCG ACCTGGTGGA GCAAGTGGGG CCATCGGTGG TGAACATTCG CACGCTTGAA
AAGGTGACAC CATCTGACGG TTCCGGTGGT GTGGACGAAC AAATGCTGGA GTTTTTCCGT
CGTTTCGGGT TGCCGATTCC GAATATGCCC AATGTTCCGA AAAATCCGCA CCAGACGCCG
CCCAAGAATC ATCCGCCGAT ACCAGAAGAC TCGCAGCCGC GTGGCGTCGG TTCCGGCTTC
ATCCTGTCGG CGGACGGTCT CATCATGACC AATGCCCACG TCGTCGATGG CGCTGACGAG
GTGTTGGTGA CGCTGACTGA CAAACGCGAG TTCAAGGCCA AAATCATTGG TGCGGACAAG
CGCAGTGATA TTGCGCTGGT CAAGATCGAG GCCGTTGGCC TGCCAGCTGT CAAAGTGGGT
GATGTGGGTC GACTCAAAGT TGGCGAATGG GTGATGGCGA TCGGGTCACC GTTCGGCTTG
GACAACACCG TGACGGCCGG TATTGTGAGT GCCAAGCAGC GCGACACGGG CGACTATCTG
CCCTTCATTC AGACCGATGT GGCTATCAAT CCTGGCAATT CGGGCGGCCC CTTGATCAAC
ATGCGCGGCG AAGTGGTGGG CGTCAACAGC CAGATTTATT CGCGCTCGGG TGGCTCTATG
GGCATCTCGT TTGCCATTCC GATGGACGAA GCGTTTCGCG TCAGCGAGCA GTTGCGCGTG
TTGGGTCGGG TCTCGCGCGG GCGCATCGGT GTGCAAATTG ACCAGGTGAC CAAAGAGGTG
GCGGAGTCCA TCGGTTTGGG CAAGGCCCAG GGGGCGCTGG TACGCGGCGT CGAGACTGGA
TCGCCGGCCG AGAAAGCAGG CGTGGAAGCA GGCGACATCA TTATCAAGTT TGAAGGGAAG
GTGGTCGAGA AGTCCAGTGA CTTGCCGCGC ATGGTGGGTA GCACCAAGCC GGGTACCCGA
AGCAGCCTGA CTGTGTTTCG TCGTGGCAGC CAGAAAGAGT TAACGGTCAC CATCGCGGAG
ATTGAAGCAG ACAAAGTCCC AGCCAAAGCG GTTGAGAAGG TGGAAAAACC CAAAGCATCC
AGTGCAGGGC AGGCGCTTGG ATTGGCTGTC GCCGAATTGA CTGATGCGCA AAAGAAAGAG
CTCAAGGTCA AAGGTGGCGT GAAGGTCGAA GCCGCCACCG ATGCGGCTGC CCGCGCCGGT
ATCCGTGAGG GAGATGTGAT TGTGGCTGTT GCCAATGTGG CGATTACCAA CATCAAGGAA
TTCGAAAGTG CGCTGGCAAA GCTTGACAAG AACAAAGCAG TCAGCGTTCT TTTGCGGCGT
GGCGAATGGG CGCAATATGC GGTGATTCGA CCGGCGCGTT AG
 
Protein sequence
MIHIDWKKLH SFVLASAFAL TASVVLVPVS QAMAQVRTLP DFTDLVEQVG PSVVNIRTLE 
KVTPSDGSGG VDEQMLEFFR RFGLPIPNMP NVPKNPHQTP PKNHPPIPED SQPRGVGSGF
ILSADGLIMT NAHVVDGADE VLVTLTDKRE FKAKIIGADK RSDIALVKIE AVGLPAVKVG
DVGRLKVGEW VMAIGSPFGL DNTVTAGIVS AKQRDTGDYL PFIQTDVAIN PGNSGGPLIN
MRGEVVGVNS QIYSRSGGSM GISFAIPMDE AFRVSEQLRV LGRVSRGRIG VQIDQVTKEV
AESIGLGKAQ GALVRGVETG SPAEKAGVEA GDIIIKFEGK VVEKSSDLPR MVGSTKPGTR
SSLTVFRRGS QKELTVTIAE IEADKVPAKA VEKVEKPKAS SAGQALGLAV AELTDAQKKE
LKVKGGVKVE AATDAAARAG IREGDVIVAV ANVAITNIKE FESALAKLDK NKAVSVLLRR
GEWAQYAVIR PAR