Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1721 |
Symbol | |
ID | 3964020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 1860331 |
End bp | 1861371 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637916544 |
Product | pseudouridine synthase, RluD |
Protein accession | YP_522981 |
Protein GI | 89900510 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAACACA TTATAGGGGG CAATCCAGTC CCACCGGCAC CTCAGGCTAC AACGATACGC GTCGACGAAG ACGCGGCTGG GCAGCGCCTG GATAATTTCC TGATGCGTCA CCTCAAGGGT GTACCGAAAA CCCATGTCTA CCGCATCATT CGCAGTGGTG AAGTCAGGGT GAACAAAGGT CGGGCCTCTG CCGATGCACG GTTGGCGGCG GGTGATACCG TGCGTTTGCC GCCGCTGCGA ATTTCCGAGC GGGTGGCGGA AAAGGCCGAG GCCATGACAC AAGCCATGGC CCATGGAGCG CCGGCGCGCG ACTTTCCCAT TTTGTTTGAA GATGAGCAAC TGCTGGTGAT TGACAAACCG GCCGGCGTGG CCGTGCACGG TGGTTCGGGC GTGAGTTTTG GCGTGATCGA ACAATTGCGC ATGGCCAGGC CCGAGGCCAA ATTTCTGGAA CTGGTGCACC GCCTGGACCG GGACACCAGC GGCATTTTGT TGATTGCGAA AAAGCGCAGC GCGTTGACCC GGCTGCAAAG CCAGTTTCGC GAGCGCGAAA CCGGCAAGAC CTATCTGGCC TTGGTGGCAG GGCACTGGCC AGCCAACCGA AAAGTGCTGG ACAAGCCGCT CTATAAATAC CTGCTGCCAG GCAAGGACGG CAGTGCGGGC GAGGGCGAAC GGCGCGTCAA GGTGGTGTCC CGGGATGATC CCAACGGCAT GCCGTCGGTG ACGCTGGTGA AAGTCAGGGA GACGACGGCG ACCAGTTTTA CCTTGCTTGA AGTCACTATC AAGACCGGGC GCACGCATCA GATCCGGGTT CATCTTGCCA GCGAGGGCTA TCCGATTGCA GGTGACGATA AATATGGCGA CTTTGGGCTG AATAAGAAAT TACTGCAGTC CGGGCCCCGG CCCGGCCTCA AACGCATGTT TTTGCATGCC TGGCGCTTGC AGTTCAACCA TCCCGCCAGC GGCGAGCGAA TGGAACTGCT GGCGCCCCTA CCGACTGAAC TTGAGGCTTT TTCCGACCAT GCCGCACCTT CTTCATCCTG A
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Protein sequence | MKHIIGGNPV PPAPQATTIR VDEDAAGQRL DNFLMRHLKG VPKTHVYRII RSGEVRVNKG RASADARLAA GDTVRLPPLR ISERVAEKAE AMTQAMAHGA PARDFPILFE DEQLLVIDKP AGVAVHGGSG VSFGVIEQLR MARPEAKFLE LVHRLDRDTS GILLIAKKRS ALTRLQSQFR ERETGKTYLA LVAGHWPANR KVLDKPLYKY LLPGKDGSAG EGERRVKVVS RDDPNGMPSV TLVKVRETTA TSFTLLEVTI KTGRTHQIRV HLASEGYPIA GDDKYGDFGL NKKLLQSGPR PGLKRMFLHA WRLQFNHPAS GERMELLAPL PTELEAFSDH AAPSSS
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