| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1708 |
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| Symbol | |
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| ID | 3962506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1837996 |
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| End bp | 1839870 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637916531 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_522968 |
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| Protein GI | 89900497 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.998594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCAC CCGACAAATT CAGCCAGTTG ATGAGCCTCA CGCGCGAGCC CCTGCCGGCC
TCGCGCAAGA TCTACGTGCC CGGCACGCAA GCCGATATTC AAGTGCCGAT GCGTGAAATC
ATGCAGAGCA ACGGCGAGGC CGTCGTGGTG TATGACACCT CCGGCCCCTA CACCGATCCG
AATGCCAACA TCGACGTGCG CCAGGGCCTG CCCTCGGTGC GCAGTCCCTG GATCGAATCG
CGTGGTGACA CCGAGTCCTA CACCGGCCGC ACGCCCTTTG CACTGGACGA TGGACTGAAG
AATGGCGACT CTGAATCATT GGCATCCTTG CGCGTGCAGG CTGCGGGCCT GCAGCGCACG
CCGCGCCGCG CCAAAGCCGG TGCCAACGTG TCGCAGATGC ATTACGCTAG ATCCGGCATC
ATCACCCCCG AGATGGAATA CGTCGCCATC CGCGAGAACC AGAAGCTGGC GTGGATGGAG
CAGTACCTGG GCAATGCCGA GCGCGAAGCA CGGCTGGCGG GCAACAGCTT CGGCGCCAAC
ATCCCGAAGA TCATGACGCC CGAGTTCGTG CGCGATGAAG TGGCCCGTGG CCGCGCCATC
ATCCCGGCCA ACATCAACCA CCCCGAAGTC GAGCCGATGG TGATTGGCCG CAACTTCCTG
GTCAAGATCA ACGCCAACAT CGGCAACTCG GCCGTGACAT CGAGCATCGA GGAAGAAGTC
GAAAAACTGG TGTGGTCGAT GCGCTGGGGC GCCGACACCG TGATGGACCT GTCCACCGGC
CGCAACATCC ACACCACGCG CGACTGGATT CTGCGCAACT CGCCGGTGCC GATCGGCACC
GTGCCGATTT ACCAGGCGCT GGAAAAAGTC GGCGGCGTGG CCGAAGACCT GACCTGGGCA
ATCTTCCGCG ACACGTTGAT CGAGCAAGCC GAGCAGGGCG TCGATTACTT CACCGTGCAC
GCCGGCGTGC GCCTGGCCTT CATCCACCTC ACGGCGAATC GCATGACCGG CATCGTGTCG
CGCGGCGGCT CGATCATGGC CAAGTGGTGT ATTGCCCACC ACAAAGAGAA TTTCATCTAC
AGCCACTTTG ATGAAATGAC CGAAATCCTG AAGGCCTACG ACGTGAGCTA CTCATTAGGC
GATGGCCTGC GCCCCGGTTC CGGTGCCGAT GCCAATGACG AAGCGCAGTT CGCCGAATTG
CGCACCCTGG GTGAACTCAC GCAGCAAGCC TGGCAGCAGG ACGTGCAGGT GATGATCGAA
GGCCCCGGCC ATGTGCCGAT GCACATGGTG CAGGCCAACA TGACCGAGCA GCTAAAAGCT
TGCCACGAAG CGCCGTTCTA CACCCTGGGG CCCCTGACCA CCGACATCGC GCCCGGCTAC
GACCACATCA CCAGCGGCAT TGGCGCGGCC ATGATCGGCT GGTTCGGCAC CGCCATGCTG
TGTTACGTCA CGCCCAAGGA ACACCTGGGT TTGCCGGATC GCGACGACGT CAAAGTGGGC
ATCATCACCT ACAAGATTGC AGCCCATGTG GCCGACGTGG CCAAGGGTCA TCCCGGCGTG
CGGGCGCGTG ATGACGCGCT GTCCAAAGCA CGCTTCGAGT TCCGCTGGAT GGACCAGTTC
AACCTGTCGC TTGACCCCGA CACGGCGCGC AACTTTCACG ACGAAACTTT GCCCAAGGAC
TCGTCGAAAG TGGCGCATTT CTGCTCCATG TGCGGACCCA AGTTCTGCTC CATGAAAATC
TCGCAGGAGG TGCGCGACTA CGCCAAGACC CGCGGCGTGA GCGAGGAGCA GGCGCTGCAG
TCTGGCATGC AAACCAAGTC CGAGGAGTTC AGACTAGCCG GTGGAGAGAT GTACATCCCG
ATCAGTCCGG CTTGA
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| Protein sequence | MNAPDKFSQL MSLTREPLPA SRKIYVPGTQ ADIQVPMREI MQSNGEAVVV YDTSGPYTDP
NANIDVRQGL PSVRSPWIES RGDTESYTGR TPFALDDGLK NGDSESLASL RVQAAGLQRT
PRRAKAGANV SQMHYARSGI ITPEMEYVAI RENQKLAWME QYLGNAEREA RLAGNSFGAN
IPKIMTPEFV RDEVARGRAI IPANINHPEV EPMVIGRNFL VKINANIGNS AVTSSIEEEV
EKLVWSMRWG ADTVMDLSTG RNIHTTRDWI LRNSPVPIGT VPIYQALEKV GGVAEDLTWA
IFRDTLIEQA EQGVDYFTVH AGVRLAFIHL TANRMTGIVS RGGSIMAKWC IAHHKENFIY
SHFDEMTEIL KAYDVSYSLG DGLRPGSGAD ANDEAQFAEL RTLGELTQQA WQQDVQVMIE
GPGHVPMHMV QANMTEQLKA CHEAPFYTLG PLTTDIAPGY DHITSGIGAA MIGWFGTAML
CYVTPKEHLG LPDRDDVKVG IITYKIAAHV ADVAKGHPGV RARDDALSKA RFEFRWMDQF
NLSLDPDTAR NFHDETLPKD SSKVAHFCSM CGPKFCSMKI SQEVRDYAKT RGVSEEQALQ
SGMQTKSEEF RLAGGEMYIP ISPA
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