Gene Rfer_1692 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1692 
Symbol 
ID3960704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1820778 
End bp1821719 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content61% 
IMG OID637916516 
Productsigma 32 (RpoH) 
Protein accessionYP_522953 
Protein GI89900482 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.645597 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTATC AATCTGGTGT TTCCGGTGCT GCCGTGGCTG TGGTCAACCC ATGGTCCATG 
GTGCCCGCGC TGGGTAATCT TGACGCCTAT ATTTCTGCGG CCAATCGCCT GCCCATGCTC
ACCCTTGAGG AAGAGCAGGA GTTTTCGCGC AAGTTCAGAC AAGACAACGA CCTGGCGGCT
GCCGGCAAGC TGGTGCTGTC GCACTTGCGG CTGGTGGTAT CGGTTTCGCG CCAGTACCTG
GGCTATGGCC TGCCGCACGG CGACCTGATC CAGGAAGGCA ATGTGGGACT GATGAAGGCC
GTCAAACGTT TTGACCCCGA TCACGGTGTG CGTCTGGTGA GCTACGCGCT GCACTGGATC
AAGGCCGAGA TCCACGAGTA CATCCTGAAA AACTGGCGCA TGGTCAAGGT GGCGACCACC
AAGGCCCAGC GCAAGCTCTT TTTTAACCTG CGCTCCATGA AACAGCGCTA CAAGTCAGAT
GACGCTGCCG CCGACCTTGG CACCCACCGC GACACGCTGA ACGAAGACCA GATTGACGCG
ATGGCCCTTG AGCTCAGGGT CAAGCGCGAG GAGGTCATGG AGATGGAAAC CCGGCTCTCG
GGGGGTGATG TGCTGCTCGA CCCCAGCCCC ACGGACGACG GTGACGACGC TTTTGGCCCG
ATTGCCTACC TGACCGATAC CCGGCACGAA CCCACTGAAA TGATCGAGGC GCACCAGCGT
GACCTGCTGG CCAGCGATGG CATTGCAACG GCGCTGGAGG CGCTCGATGA GCGCAGCCGG
CGCATCGTGG AGGAGCGCTG GCTCAAGGTC AACGATGACA ACTCGGGCGG CATGACGCTG
CACGAACTGG CAGCGGTGTA TGGCGTGAGC GCCGAACGTA TCCGCCAGAT CGAGGTGGCG
GCGATGAAGA AGATGAAAAA GACGCTGGCC GAGTACGCTT GA
 
Protein sequence
MSYQSGVSGA AVAVVNPWSM VPALGNLDAY ISAANRLPML TLEEEQEFSR KFRQDNDLAA 
AGKLVLSHLR LVVSVSRQYL GYGLPHGDLI QEGNVGLMKA VKRFDPDHGV RLVSYALHWI
KAEIHEYILK NWRMVKVATT KAQRKLFFNL RSMKQRYKSD DAAADLGTHR DTLNEDQIDA
MALELRVKRE EVMEMETRLS GGDVLLDPSP TDDGDDAFGP IAYLTDTRHE PTEMIEAHQR
DLLASDGIAT ALEALDERSR RIVEERWLKV NDDNSGGMTL HELAAVYGVS AERIRQIEVA
AMKKMKKTLA EYA