Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1692 |
Symbol | |
ID | 3960704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 1820778 |
End bp | 1821719 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637916516 |
Product | sigma 32 (RpoH) |
Protein accession | YP_522953 |
Protein GI | 89900482 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.645597 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTTATC AATCTGGTGT TTCCGGTGCT GCCGTGGCTG TGGTCAACCC ATGGTCCATG GTGCCCGCGC TGGGTAATCT TGACGCCTAT ATTTCTGCGG CCAATCGCCT GCCCATGCTC ACCCTTGAGG AAGAGCAGGA GTTTTCGCGC AAGTTCAGAC AAGACAACGA CCTGGCGGCT GCCGGCAAGC TGGTGCTGTC GCACTTGCGG CTGGTGGTAT CGGTTTCGCG CCAGTACCTG GGCTATGGCC TGCCGCACGG CGACCTGATC CAGGAAGGCA ATGTGGGACT GATGAAGGCC GTCAAACGTT TTGACCCCGA TCACGGTGTG CGTCTGGTGA GCTACGCGCT GCACTGGATC AAGGCCGAGA TCCACGAGTA CATCCTGAAA AACTGGCGCA TGGTCAAGGT GGCGACCACC AAGGCCCAGC GCAAGCTCTT TTTTAACCTG CGCTCCATGA AACAGCGCTA CAAGTCAGAT GACGCTGCCG CCGACCTTGG CACCCACCGC GACACGCTGA ACGAAGACCA GATTGACGCG ATGGCCCTTG AGCTCAGGGT CAAGCGCGAG GAGGTCATGG AGATGGAAAC CCGGCTCTCG GGGGGTGATG TGCTGCTCGA CCCCAGCCCC ACGGACGACG GTGACGACGC TTTTGGCCCG ATTGCCTACC TGACCGATAC CCGGCACGAA CCCACTGAAA TGATCGAGGC GCACCAGCGT GACCTGCTGG CCAGCGATGG CATTGCAACG GCGCTGGAGG CGCTCGATGA GCGCAGCCGG CGCATCGTGG AGGAGCGCTG GCTCAAGGTC AACGATGACA ACTCGGGCGG CATGACGCTG CACGAACTGG CAGCGGTGTA TGGCGTGAGC GCCGAACGTA TCCGCCAGAT CGAGGTGGCG GCGATGAAGA AGATGAAAAA GACGCTGGCC GAGTACGCTT GA
|
Protein sequence | MSYQSGVSGA AVAVVNPWSM VPALGNLDAY ISAANRLPML TLEEEQEFSR KFRQDNDLAA AGKLVLSHLR LVVSVSRQYL GYGLPHGDLI QEGNVGLMKA VKRFDPDHGV RLVSYALHWI KAEIHEYILK NWRMVKVATT KAQRKLFFNL RSMKQRYKSD DAAADLGTHR DTLNEDQIDA MALELRVKRE EVMEMETRLS GGDVLLDPSP TDDGDDAFGP IAYLTDTRHE PTEMIEAHQR DLLASDGIAT ALEALDERSR RIVEERWLKV NDDNSGGMTL HELAAVYGVS AERIRQIEVA AMKKMKKTLA EYA
|
| |