| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1689 |
|---|
| Symbol | |
|---|
| ID | 3960701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1817943 |
|---|
| End bp | 1818839 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637916513 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_522950 |
|---|
| Protein GI | 89900479 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.575941 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTCC ATGTTCTGAG TGTTGAGGTC TCGGTTATCA AGCAGTTTTA TGCGCTGACC
AAACCGCGCG TGATTCAGTT GATTGTGTTT TGCGCCTTGA TCGGCATGGT GCTGGCCGTG
CCGGGCTTGC CGACCTGGGC CGAGCTCCAA CTGGCCTTGT TGGCTTGCCT GGGCATCTGG
CTGGTGGCGG GCGCAGCGGC GGCCTTCAAT TGCGTTGTCG AAAAAAGCAT CGACGCCAAG
ATGAAGCGCA CGGCCTGGCG GCCGACCGCA AGGGGCGAAC TGGCCGATTG GCAGACGCTG
CTGTTTTCGG CCGTGTTGTG CGCGGCGGGC TCCATACTGC TGTATTTTTG GGTCAACCCG
CTGACCATGT GGCTGACCTT TGCCACCTTT ATTGGTTATG CGGTGGTGTA CACCGTGATT
CTGAAGCCAC TGACGCCGCA AAACATCGTG ATTGGCGGCG CCTCCGGCGC CATGCCGCCG
GTGCTGGGCT GGGCCGCCAT GGCGGGCGAC GTCGGCCCGG AAGCGCTGAT TTTGTTTCTG
ATTATCTTTT TGTGGACGCC GCCGCATTTC TGGGCACTGG CCTTGTACCG CGTGGAGGAC
TACCGCAAGT CGGGCCTGCC GATGCTGCCG GTGACACACG GCAATGAGTT CACCCGCTTG
ATGGTGCTGC TCTACACCTT CATTTTGTTT GCTGCCTGTT TGATGCCGTA TGTCTACGGC
ATGAGTTCCT GGCTTTACCT GATTGCCGCC GTGGTTTTGA ATCTTGGCTT TTGTCTGTAT
GCCTTCTATC TCTGGCGTGA TTATTCGGAC TTGCTGGCCC GCAAAACCTT TCGCTTCTCA
CTGATCCATC TGAGCCTGCT GTTTGCCGCC TTGCTTCTGG ATCACTATCT GCTTTGA
|
|---|
| Protein sequence | MSVHVLSVEV SVIKQFYALT KPRVIQLIVF CALIGMVLAV PGLPTWAELQ LALLACLGIW
LVAGAAAAFN CVVEKSIDAK MKRTAWRPTA RGELADWQTL LFSAVLCAAG SILLYFWVNP
LTMWLTFATF IGYAVVYTVI LKPLTPQNIV IGGASGAMPP VLGWAAMAGD VGPEALILFL
IIFLWTPPHF WALALYRVED YRKSGLPMLP VTHGNEFTRL MVLLYTFILF AACLMPYVYG
MSSWLYLIAA VVLNLGFCLY AFYLWRDYSD LLARKTFRFS LIHLSLLFAA LLLDHYLL
|
|---|
| |