| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1677 |
|---|
| Symbol | |
|---|
| ID | 3960426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1807969 |
|---|
| End bp | 1808454 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916501 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_522938 |
|---|
| Protein GI | 89900467 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.451539 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCATA TCGTCCTGGT CGAACCCGAG ATCCCGCCCA ACACCGGCAA CATCATCCGC
CTGTCGGCCA ACACCGGCTG CGCCCTGCAC CTGATTGAGC CGCTGGGGTT CTCCATGGAC
GACAAGCACA TGCGCCGGGC CGGGCTGGAC TACCACGAGT ACGCCACCGT CAAGCGCCAT
GCCAGCTGGC AGGCCTTTCT GGCTGGCGAA CAGCCAGCCC CCGAGCGCAT GTTTGCCCTG
ACCACCCGCG CCGGTCGCAG TGTTTATGAG GCGCAATTTG CGCCCGGTGA CTGGCTGGTG
TTTGGGTCTG AAACCAAGGG CTTGAGCGAC GCCGTGCGGC AATCATTTAC CCTCGCTCAA
AGCCTGAAGC TGCCCATGAT CGAAGGCCAG CGCAGCCTTA ATTTGTCAAA CGCCGTGGCG
GTCACTGTAT TTGAAGCCTG GCGCCAAAAC GCCTTTGGCG CATCACGGGT AGTGCCGCGC
GACTGA
|
|---|
| Protein sequence | MFHIVLVEPE IPPNTGNIIR LSANTGCALH LIEPLGFSMD DKHMRRAGLD YHEYATVKRH
ASWQAFLAGE QPAPERMFAL TTRAGRSVYE AQFAPGDWLV FGSETKGLSD AVRQSFTLAQ
SLKLPMIEGQ RSLNLSNAVA VTVFEAWRQN AFGASRVVPR D
|
|---|
| |