| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1631 |
|---|
| Symbol | |
|---|
| ID | 3964160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1761703 |
|---|
| End bp | 1762887 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916454 |
|---|
| Product | putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_522892 |
|---|
| Protein GI | 89900421 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.526463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCACT ACTTGCGCCC CGGCACCTTA CAGTTGGCCG CCTTGCCGCC GCTGTCGCTT
TATGTGCATC TGCCCTGGTG TTTGAAGAAA TGCCCTTATT GCGACTTCAA CTCGCACGAG
ATGCGCGCCG CCGAGCTGCC CGAGCAGCGT TACCTGGCGG CCTTGATGGC CGACCTGGAA
GCCGCCTTGC CTTTGACTTG GGGCCGCACG GTGCACAGCA TTTTTATCGG TGGCGGCACG
CCCAGCCTGT TTTCACCCGA GGCCATCGAC CATCTGCTGA GCGGCATCCG GGCGCGGCTG
CGACTGGAGG CGGGTTGCGA AATCACGCTG GAGGCCAATC CGGGCAGCTT TGAGAAAGAT
CGCTTTCGGG CCTTTCGCGG CGCCGGCGTG ACCCGCTTGT CGGTTGGGGT GCAGAGCTTT
AACGACTCAT TCTTGAAGAC CCTGGGGCGG GTGCATGACA GCGCGCAAGC GCTCGCCGCG
GTGGAAGAAG CGGCGCAGGC GTTTGACACT TTCAACCTGG ACCTCATGTA CGCGCTGCCT
GGGCAGACGC TGGCTGACGT CAAGCAAGAC ATGGCGCGCG CGCTGACCTT TTCGCCGCCG
CATATTTCGA TTTATCAGCT CACCATCGAG CCCAACACCT TCTTTGCCAA GTATCCGCCG
CCGCTGCCTG AAGACGATAC AGCCTACGAC ATGCTGGACC TCATCACCGA CATGACCGGC
TCAGCAGGCC TGCAGCGCTA CGAAGTGTCG GCCTATGCCG CTCCCGGCCA CCGCTGCTTT
CACAACCTCA ATTACTGGCA GTTTGGCGAC TACCTCGGCC TCGGAGCCGG CGCGCACAGC
AAGCTCAGTT TTGCGCACCG GGTGGTGCGC CAAGTGCGGT TTCGCGAGCC CGGGCGCTAC
ATGGAACAAG CCTTGGCGGG CCATTGTCTG GCGCAGGACG AAGAGGTCAG CCGGGCCGAT
TTGCCGTTTG AGTTCATGTT GAATGCCTTG CGTTTGAAAG ACGGCTTCGC CCTGCAACTG
TTCTCAGAGC GCACGGGTCT CGCAATTACC ACCATTCAAG CGGCGCTGGA GCAGGCTCAG
GCGCAGGGTT TGATCGTGCG CGACCTGGCC CGCGTCACGC CCACTGTGCG CGGTTTTGAT
TTTTTGAGTG ACTTGCAGTC GCTGTTTCTT CCCAAGCGCC GTTGA
|
|---|
| Protein sequence | MGHYLRPGTL QLAALPPLSL YVHLPWCLKK CPYCDFNSHE MRAAELPEQR YLAALMADLE
AALPLTWGRT VHSIFIGGGT PSLFSPEAID HLLSGIRARL RLEAGCEITL EANPGSFEKD
RFRAFRGAGV TRLSVGVQSF NDSFLKTLGR VHDSAQALAA VEEAAQAFDT FNLDLMYALP
GQTLADVKQD MARALTFSPP HISIYQLTIE PNTFFAKYPP PLPEDDTAYD MLDLITDMTG
SAGLQRYEVS AYAAPGHRCF HNLNYWQFGD YLGLGAGAHS KLSFAHRVVR QVRFREPGRY
MEQALAGHCL AQDEEVSRAD LPFEFMLNAL RLKDGFALQL FSERTGLAIT TIQAALEQAQ
AQGLIVRDLA RVTPTVRGFD FLSDLQSLFL PKRR
|
|---|
| |