| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1574 |
|---|
| Symbol | |
|---|
| ID | 3960911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1702899 |
|---|
| End bp | 1704725 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916398 |
|---|
| Product | peptidase M61 |
|---|
| Protein accession | YP_522837 |
|---|
| Protein GI | 89900366 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTC GACCCACCAA CGCCACCGCA GCCGTGCACT ACCGGGTCGA CCTGCAGAGC
CTGACTGCTC ATCTATTTGC CGTCACGCTG ACCATTGCAA AGCCTGCCGC CTTGCAGCGC
GTGAGCCTGC CGGTCTGGAT TCCGGGCAGC TATCTGGTGC GCGAATTTGC CAAGAACCTG
CAGCGCCTGC AGGCCCACCA AGGCGGCCAC GCCGTGGCCT TGACCCAGCT CGGCAAATGC
AGCTGGCAGG CCCGGTGCCA GACGAACCAA GCGCTGGTTC TGCAGTATGA GATTTACGCG
CTTGACAACT CGGTGCGCAC CGCGTGGCTG GACGGCGCGC GCGGGTTTTT CAATGGCACC
AGCCTGTTTC TGAAGGTCGA GGGCCAAGAG GCGTTGCCGC ATGAACTGAC GCTATTGGCG
CACCCGGACC TGGCCGACTG GCAACTGGCA ACCGGTCTAC CCCCCACCAA AACCACACGC
AACGGCTTTG GCACCTATCT GGCCAGCGAC TACGGCGAAC TGGTGGACTG TCCGGTCGAA
ATGGGTCCGT TCTGGCATGG CGCGTTCGTG GCGGGCGGCA TCCCGCACCG GTTTGTCGTC
GCGGGCGCTC CACCCGCCTT TGATGGCAAG CAACTGCTGG CCGACACGCA ACGCATTTGC
GAAGCAGAAA TCCAGTTCTG GCATGGCGCC CGGTCGAGTA AGCGCGCCCC TGCCAAACCA
CCGCACAAAA CCTATTGCTT CCTGCTCAAT GCCGTGGACG ACGGTTATGG CGGTTTGGAA
CACCGCAATT CCACCGCACT CATCTGCAAG CGCCAGGACT TGCCACGCCT GGGCCACCCA
GCGCGCGCGC AAGGAACCAA TCCTGCGCCG GACCAAGCAG CCGAAGGCTA TAAGACGCTG
CTGGGCCTGA TCAGCCACGA ATACTTCCAC ACCTGGAACG TCAAGCGCTT GCGCCCGGCC
GAGTTCACCG ACTATGACTA TGGGCGCGAA AACTACACGC AGCTGCTCTG GTTTTTTGAA
GGATTCACCA GCTATTACGA CGATTTGCTG CTGCGCCGCG CTCATCTGAT TGACGACCTC
GCCTACCTGA AACTGCTCAC CAAGACCATC AACCAGGTGC TGCAAACGCC TGGACGAGCC
GTGCAAAGCG TGGCACAAGC CAGTATGGAT GCCTGGGTCA AGTACTACAG GCAAGACGAA
AACACACCCA ACGCGACCGT GAGTTACTAC ACCAAGGGTG CTCTGGTGGC GCTGTGTCTG
GACCTGACAC TGCGGCAAGA GGGCAAGACG TCATTGGACG TCGTGATGCG CGCCTTGTGG
CTGCGCTGCC AGGGCGGGCC GATGACCGAG GCCGACCTGA CGGCGACGCT GGAAGCCCTG
GGGGGGCGCT CCTATGCGCA GGAAGTCGCC CAGTGGGTGC ACGGCACTGC CGACCTGCCG
CTGCAATCCC TGCTGACAGC ACAAGGTATC AAGGTACTGG AAGAGCCGGC CCAACTCGCG
CAACGTCTGG GCCTGCGCGT GACCGAAACT GCCGGCGTGC AGATCAAGAC CGTGCTGCGC
GGCGGTGCGG CAGAACAAGC GGGTTTGGCG GCCGGGGATG AATGGCTGGG CCTTGAAGTG
GAATCGGGCA AGTCGGCCAG CGCCTGGCGC ATCAACAAGC TTGATGATCT GATGCTCTAT
GCCGCAAGCG CCAGCAAAAT TTGCGCCCTG GTCGCGCGCG ACAAGCGCCT GCTGAAGCTG
CCACTGACGC TGCCCCAGTC GGTCACCACC TGGCGCCTGA CGGCGCGCGA CAGTCAACTG
ATCGGTCAAT GGCTCAATGC CGCTTGA
|
|---|
| Protein sequence | MTRRPTNATA AVHYRVDLQS LTAHLFAVTL TIAKPAALQR VSLPVWIPGS YLVREFAKNL
QRLQAHQGGH AVALTQLGKC SWQARCQTNQ ALVLQYEIYA LDNSVRTAWL DGARGFFNGT
SLFLKVEGQE ALPHELTLLA HPDLADWQLA TGLPPTKTTR NGFGTYLASD YGELVDCPVE
MGPFWHGAFV AGGIPHRFVV AGAPPAFDGK QLLADTQRIC EAEIQFWHGA RSSKRAPAKP
PHKTYCFLLN AVDDGYGGLE HRNSTALICK RQDLPRLGHP ARAQGTNPAP DQAAEGYKTL
LGLISHEYFH TWNVKRLRPA EFTDYDYGRE NYTQLLWFFE GFTSYYDDLL LRRAHLIDDL
AYLKLLTKTI NQVLQTPGRA VQSVAQASMD AWVKYYRQDE NTPNATVSYY TKGALVALCL
DLTLRQEGKT SLDVVMRALW LRCQGGPMTE ADLTATLEAL GGRSYAQEVA QWVHGTADLP
LQSLLTAQGI KVLEEPAQLA QRLGLRVTET AGVQIKTVLR GGAAEQAGLA AGDEWLGLEV
ESGKSASAWR INKLDDLMLY AASASKICAL VARDKRLLKL PLTLPQSVTT WRLTARDSQL
IGQWLNAA
|
|---|
| |