Gene Rfer_1567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1567 
Symbol 
ID3963274 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1692836 
End bp1694845 
Gene Length2010 bp 
Protein Length669 aa 
Translation table11 
GC content61% 
IMG OID637916390 
Productbifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase 
Protein accessionYP_522830 
Protein GI89900359 
COG category[E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism 
COG ID[COG0128] 5-enolpyruvylshikimate-3-phosphate synthase
[COG0283] Cytidylate kinase 
TIGRFAM ID[TIGR00017] cytidylate kinase
[TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.484392 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTCCA CCGCGTTTCT TGATATTCCA CCGCTCACGG GAGTGAGCGG GACAGTTGTA 
TTACCCGGCT CCAAGAGCAT CTCCAACCGC GTGTTGCTGC TGTCGGCCCT GAGCGCCGGC
CGCACCACGC TGATTGACCT GCTCGACTCC GACGACACCC GCGTCATGTT TGAGGCCTTG
CGCGCGCTGG GGTGTGGTGT GCGGCAATCG GGCAGCACCG TCGAGATTGA GGGTCTGGGT
GGCCAACTCG GGCACAGGCA GGCGGCGCTG TTCATGGGCA ACGCCGGCAC CGCGATTCGT
CCGCTCACCG CCGCGCTGGC CGTTTTGGGC GGCGACTTTG AACTGCGCGG TGTGCCGCGC
ATGCACGAAC GCCCGATTGG CGACCTGGTA GATGCACTGC GCCAAATCGG CTGCCACATC
GATTACCTGG GACAGGACGG CTTTCCGCCG CTGCACATTG GCCGACCCAG CCTGAAGCTG
GACACGCCGA TTCGCGTGCG GGGCGATGTG TCCAGCCAGT TTCTGACCGC ACTGCTGATG
GCGCTGCCCT TGGTCGCAGC GACCCGCGAT ATTGTCATTG AGGTGGTCGG AGAGCTGATT
TCGCGCCCTT ACATTGAAAT CACACTCAAC CTGCTGGCGC GCTTTAACGT GCGGGTGGTC
CGCGATGGCT GGCAGCGCTT CACCATTCCC GCCGCCAGCC AGTTCCGCTC TCCTGGCACT
TTGTTTGTTG AAGCTGACGC CTCGTCTGCT AGCTATTTCA TAGCTGCCGG CGCAATAGCA
ACGGGGGCTG GAGGTCAAAA AGGCTTAAGG ATTGAAGGCG TGGGCGCAGA CTCCATCCAG
GGCGACATCC GTTTCATCGA AGCCGCGCAG ATGATGGGCG CGCAGGTGCA GAGCGGCCCG
AATTGGCTGG AAGTATCCAG AGGCTGCTGG CCACTCAAAG CCATTGACCT GGACTGCAAC
CACATCCCGG ACGCCGCCAT GACACTTGCC ATGATGGCTT TGTACGCCCA GGGCAGCACC
ACGCTGCGCA ACATCGCCAG CTGGCGCGTC AAGGAAACTG ACCGCATCGC GGCCATGGCG
TGTGAGTTGC GCAAGCTCGG CGCCACGGTC GAAGAAGGCG CGGACTTCAT TCGCGTGACA
CCGCCAGCCG TTGCCGCCGA CTGGCGCGCG GCCAGCATCC ACACCTATGA CGACCACCGC
ATGGCGATGT GTTTTTCACT CGCCGCCTTC AACCCGGCCG GTCTGCCGGT GCGGATTGTT
GACCCCAAAT GCGTGGCCAA GACCTTTCCC GATTATTTTG AAGCGCTGTT CTCGCTCGCG
CAGACCTCAG CCCAGGCCAT TCCCGTGATT TGTGTCGATG GCCCAACCGC GTCCGGCAAG
GGCACCTTGG CGGGCGCAGT GGCCCAGGCG CTGGGCTACC ATTTGCTCGA TTCCGGCTCG
CTGTACCGGA TCACGGCTTT GGCGGCGTTG CAGGCTGGCC TGGCGCTGGA GTTCGCCCAT
GAGCAGGCGA TCGCGGACTT GATTCCAGGT CTCTCCATCC GGTTCAGCCA GGACCAGGTG
TTTTTGAACG GTGTTGACGT CAGCGAAGCT ATTCGCACCG AAGAGGCCGG CATGAATGCT
TCCAGAGTCT CGGCACTGCC CAAGGTGCGC CTGGCTCTCA TCGCCTTGCA GCACAGTTTT
CGCCAATTGC CCGGGCTGGT TGCTGACGGC CGCGACATGG GAACCATCAT CTTCCCTGAG
GCCGCGCTCA AGGTGTTTTT GACTGCCAGC GCCGAAAAGA GAGCGCAGAG GCGTTATAAA
CAATTGATTT CAAAGGGTAT TTCGGCTACA CTCTCGGGTC TTCGCGCGGA CTTGGAAGCA
CGCGATGCAC GGGACACCTC CCGCAGCGTC GCGCCTCTCA AGCCAGCACA AGATGCCCAG
CTGCTTGATA ACTCGGATTT AACGGTTGAA GAATCGGTCA ATCTGGTGTT GGACTGGTGG
CAAAGCAAAC AGCCTTTCAG AGCAATCTGA
 
Protein sequence
MFSTAFLDIP PLTGVSGTVV LPGSKSISNR VLLLSALSAG RTTLIDLLDS DDTRVMFEAL 
RALGCGVRQS GSTVEIEGLG GQLGHRQAAL FMGNAGTAIR PLTAALAVLG GDFELRGVPR
MHERPIGDLV DALRQIGCHI DYLGQDGFPP LHIGRPSLKL DTPIRVRGDV SSQFLTALLM
ALPLVAATRD IVIEVVGELI SRPYIEITLN LLARFNVRVV RDGWQRFTIP AASQFRSPGT
LFVEADASSA SYFIAAGAIA TGAGGQKGLR IEGVGADSIQ GDIRFIEAAQ MMGAQVQSGP
NWLEVSRGCW PLKAIDLDCN HIPDAAMTLA MMALYAQGST TLRNIASWRV KETDRIAAMA
CELRKLGATV EEGADFIRVT PPAVAADWRA ASIHTYDDHR MAMCFSLAAF NPAGLPVRIV
DPKCVAKTFP DYFEALFSLA QTSAQAIPVI CVDGPTASGK GTLAGAVAQA LGYHLLDSGS
LYRITALAAL QAGLALEFAH EQAIADLIPG LSIRFSQDQV FLNGVDVSEA IRTEEAGMNA
SRVSALPKVR LALIALQHSF RQLPGLVADG RDMGTIIFPE AALKVFLTAS AEKRAQRRYK
QLISKGISAT LSGLRADLEA RDARDTSRSV APLKPAQDAQ LLDNSDLTVE ESVNLVLDWW
QSKQPFRAI