Gene Rfer_1554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1554 
Symbol 
ID3960544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1676888 
End bp1677517 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content55% 
IMG OID637916374 
ProductATP-dependent Clp protease, proteolytic subunit ClpP 
Protein accessionYP_522817 
Protein GI89900346 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0740] Protease subunit of ATP-dependent Clp proteases 
TIGRFAM ID[TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCTGC CGAACATGAT GATGGGTGCA ATGCAAACGC AAGCTTTGGG CATGGTGCCC 
ATGGTGATTG AGCAGTCAGG GCGCGGCGAG CGGTCTTACG ACATTTACTC GCGGCTACTG
AAGGAGCGTG TCATTTTTTT GGTCGGTCCA GTCAACGACT ATGTGGCCAA TCTGGTGGTG
GCGCAATTGC TGTTCCTGGA AAGCGACAAC CCGGATAAGG ATATATCGTT CTATATCAAC
TCGCCGGGCG GCTCGGTCAG CGCTGGCATG GCGATTTTTG ACACAATGAA CTTTGTCAAG
CCCGATGTAT CTACCTTGTG TACAGGTATG GCCGCCAGCA TGGGTGCATT TTTGCTGGCT
GCCGGGGCCA AAGGCAAACG TTTCTCACTG CCTAACTCCA AGGTCATGAT TCATCAACCC
TCGGGCGGCA GTCAGGGGCA GGCGACGGAG ATCGAAATTC AGGCGCGCGA GATTTTGAAA
ACCCGCGAGC AACTGAATAA GATTCTGGCC GAGCGCACCG GCCAGCCGTT GGCGCGTATT
GAGCGCGACA CCGAGCGCGA CTATTACATG TCGGCGGACG AGTGCAAAGA ATATGGCCTG
ATTGACCAGG TCATCTCGAA AAGGGCATAG
 
Protein sequence
MSLPNMMMGA MQTQALGMVP MVIEQSGRGE RSYDIYSRLL KERVIFLVGP VNDYVANLVV 
AQLLFLESDN PDKDISFYIN SPGGSVSAGM AIFDTMNFVK PDVSTLCTGM AASMGAFLLA
AGAKGKRFSL PNSKVMIHQP SGGSQGQATE IEIQAREILK TREQLNKILA ERTGQPLARI
ERDTERDYYM SADECKEYGL IDQVISKRA