| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1551 |
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| Symbol | |
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| ID | 3960540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1670842 |
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| End bp | 1672038 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637916370 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_522814 |
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| Protein GI | 89900343 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.828693 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCATCA ACTCAATTCA ATTCCGGGCG ACGCTCATCG CGACCGTGCT TCTGTTGGCC
GCTTGTTCCA GGCCAGCGCC GAGTGAGGAG CCGGTCCGCG CCGTGAAGGT CATCACCGTG
GGGCTGGCGC GCATGGACTC TGGCGCCGAA TTCGCGGGCG AGGTGCGCGC CCGCGTCGAG
TCGCGCCTGG GCTTTCGGGT GGGCGGCAAG ATTGTGCGGC GCCAGGTGGA GCTGGGCCAG
CGCGTCAAGG CAGGCCAGGT GCTGGCGCAG TTGGATCCGC TGGACTACCA GTTGGCGGCG
CAAGCGGCGC GGGCGCAGGT GGCCGCAGCG GTCAGCAGCC AGGAGCTGGC CGCTTCAGAT
TTCAAGCGCT ACCAGGACCT GCGCGAGCGC AACTTCATCA GCGCGGCTGA ACTGGAGCGG
CGAGAGGCCG GCCTGAAGGC TGCGCAGGCG CAACTGGCCC AGGCCCAGGC GCAGTCCGGC
GGTCAAGGCA ACCAGGCCTC CTACACCACC TTGGTGGCCG ATGTGGCGGG CGTGGTGACG
GCGGTGGAGG CCGAACCGGG TCAGGTGGTG GCTGCCGGCA CGCCGGTGGT GCGGGTGGCG
CAGGACGGCC CGCGTGATGT GGCGTTTGCC GTGCCGGAAG ACCAGGTCGC GTTGATCAAG
ACCGGCGCGG CGGTGGTCGT GCGCGGCTGG TCCGGCGCGG CCAGCGTCAA CGGGGTGGTG
CGTGAGGTGG CGGCCAGTGC CGACCCGGTG ACGCGCACTT TTGGCGTGAA GGTGGCGCTG
GGGGCTCAAG ACACTTTGGC CCTGGGTTCG ACCGTCACGG TGCTGCTGTC GAGCCTGGAT
CGCGGCGCCG CGCCGGCCAT CAAGCTGCCC ACCAGTGCCT TGCGCCAGGA CGGCAAGTCG
CAAGCGGTGT GGGTGCTCGA CAAACCCAGC ATGACGGTCC GGCTGCAGCC GGTCCAAATT
GCCACGGTCG ATGGCAACGA GGTGGTGCTG GCGGGCGGTC TGCAGCCGGG CATGCAGGTG
GTGGTGGCCG GTGTGCATGT GTTGTCGCCC GGTCAAAAAG TGACCATCTA TAAGGAAAAT
AAGGCTCTAG CCTCCGTCAA TACGACGCAA GCAGCTACTA ATTCAGTAGC GGTTTCGGTG
CCACCAGGCG CCACTCCCGC ACCGGCTGCG TCCGCTGCGA GCGCAGTGGC CAAGTGA
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| Protein sequence | MSINSIQFRA TLIATVLLLA ACSRPAPSEE PVRAVKVITV GLARMDSGAE FAGEVRARVE
SRLGFRVGGK IVRRQVELGQ RVKAGQVLAQ LDPLDYQLAA QAARAQVAAA VSSQELAASD
FKRYQDLRER NFISAAELER REAGLKAAQA QLAQAQAQSG GQGNQASYTT LVADVAGVVT
AVEAEPGQVV AAGTPVVRVA QDGPRDVAFA VPEDQVALIK TGAAVVVRGW SGAASVNGVV
REVAASADPV TRTFGVKVAL GAQDTLALGS TVTVLLSSLD RGAAPAIKLP TSALRQDGKS
QAVWVLDKPS MTVRLQPVQI ATVDGNEVVL AGGLQPGMQV VVAGVHVLSP GQKVTIYKEN
KALASVNTTQ AATNSVAVSV PPGATPAPAA SAASAVAK
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