| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1549 |
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| Symbol | |
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| ID | 3960538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1668960 |
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| End bp | 1669799 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637916368 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_522812 |
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| Protein GI | 89900341 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCAC AAGACTACGT CCAGCAAAAA GCCGCCGCTT CGGGCAGCAG CTTCTATTAC
GCCTTTCTGT TTTTGCCGCC GACCCAACGC GCCGCCATCA CTGCCTTTTA TGCGTTCTGC
CGCGAGATCG ATGACGTGGT GGATGACATG GTGGACCCCA GCGTGGCCAG CAGCAAGCTG
GCCTGGTGGC AGGCCGAAGT CACCCAGTCG TTTGCCGGGC GGCCCAGCCA CCCGGTGCTG
CAGGCCTTGA TGCCCCTGGC GGCCGAGTTC CAGATTGAAC AACACCACCT CCAGTCCGTG
ATCGAAGGCT GCCAGATGGA CCTGACGCAA ACCCGCTACC TCGACTACCC CGGCCTGCAG
CGCTACTGCC ATCTGGTGGC GGGCGTGGTG GGCGAAGTGG CAGCGCAGAT TTTTGGTCAG
ACCGTGCCGC AAACCACCCT GTACGCGCAC AAGCTGGGCC AGGCGCTGCA ACTCACCAAT
ATCATTCGCG ACGTCGGCGA AGATGCCGGG CGGGGCCGCA TCTACCTGCC GGTCAACGAG
TTGCAGCAGT TTGACGTCAA GGCACATGAA ATCCTCAAGC GCAGCTACTC CGAGCGCTTT
ACCGCGCTGA TGCAGTTTCA GGCCCGGCGT GCACAAGGCC TGTACGACGA GGCGCTGGCC
CTGTTACCCG CCGTAGATCG CCGCGCGCAA AAGCCAGGCC TGATGATGGC CAGCATCTAC
CGCGCCTTGC TCACTGAAAT CGAGCACGAC AACTTCCAGG TGCTGCACCA GCGTATCAGC
CTCACGCCCT TGCGCAAACT GTGGCTGGCG TGGAAGGTGC AGGCGCTGGG GCGGATGTGA
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| Protein sequence | MTPQDYVQQK AAASGSSFYY AFLFLPPTQR AAITAFYAFC REIDDVVDDM VDPSVASSKL
AWWQAEVTQS FAGRPSHPVL QALMPLAAEF QIEQHHLQSV IEGCQMDLTQ TRYLDYPGLQ
RYCHLVAGVV GEVAAQIFGQ TVPQTTLYAH KLGQALQLTN IIRDVGEDAG RGRIYLPVNE
LQQFDVKAHE ILKRSYSERF TALMQFQARR AQGLYDEALA LLPAVDRRAQ KPGLMMASIY
RALLTEIEHD NFQVLHQRIS LTPLRKLWLA WKVQALGRM
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