| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1526 |
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| Symbol | |
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| ID | 3960680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1642833 |
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| End bp | 1644347 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637916345 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_522789 |
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| Protein GI | 89900318 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCGTT GGCATCTCAC CATGAAGCAC GCGATTCACT GGAATCTTTG GAGTCCCTTC
ATCCGCAACG CTTTGTTGAT GGCCGGCCTG ATCAGTGCCG GTCTGGCGGT CTGGTCCCAC
TATGGGTGGA TGGCGCTGGG TGGTCTGGCG GCCCTGGCCC TGATCGTGTG GCAAGGCACA
CGCTTATTCA TGACGCGGCG CAGGCTGACG GAACAGTATC GTTTGGTGCT GTTGCAAAAG
AAACGGCTCA GAGAAAGTGA ATTCCGCTGG AAATTTGCCA TTGAAGGCTC GGGGGACGGC
CTGTGGGACT GGAACGTGGC CGACGGGAGC GTCTACTTCA GCGCGCAATA CAAACAAATG
CTCGGTCTGA CGGTTGATGA GATGGATCAA CGCTTGCAGG AGTGGGAGAC GCGCGTTCAC
CCAGATGACA AGGCCGGGAG CCTGATGGCG CTGCAATCCC ACCTTGACGG ACAGAGCCCG
GTGTATGCCG CCCAATACCG CATGCGCTGC AAGGACGGCA GCTACAAGTG GATTCTCGAC
CGTGGCATGG TGGTCAGCCG CAGTGATGCG GGCAAACCCT TGCGCATGAT TGGCATCCAT
ACCGACATCA CCGTGCACAA GCAAGCAGAG GAAAAACTTC AACTCGCCGC CAGCGTTTTC
ACCCATGCAC TCGAAGGCAT CATGATCACC GATGCGCAGG GTCTGATCAT CGACGTGAAC
CAGTCTTTCA GTCGCATCAC CGGCTACGAG CGTGACGAGG TGTTGGGCCG CAACCCGCAT
CTTTTGAGCT CCGGTCGGCA GAGCCAGGCC TTTTACGCCG CCATGTGGCG TGATCTGCAG
GAAGAGGGGT GCTGGTATGG TGAAGTCTGG AACCGGCGCA AAAGTGGCGA GGTCTATGCC
CATCTGCAAA ACATCAGCGC GGTGCGCGAT GCCCAGGGCC AGACCCGGCA GTACGTCTCG
CTGTTTTCCG ACAACACCGC GCTCAAGGCG CACCAGCAGC AACTCCAGCA CCTGGCCCAC
TTTGATGCAC TGACCGACCT GCCCAACCGC CTGTTGCTGG CCGATCGCCT GCACCAGGGC
ATGGTGCAGG TGCAGCGGCG CGGACAAATG CTGGCGCTGG CTTTTGTTGA CCTGGACGGT
TTCAAGCTGA TCAACGACAG CCATGGACAT GAAGCGGGCG ACCACCTGCT GATGACGGTG
GCGACCCGCA TGAAGCAAGC CCTGCGCGAA GGGGACACCC TGGCCCGCTT GGGCGGCGAC
GAGTTTGTCG CCGTGATGTT CGATCTGGCA GACGAGGCGG CCTGCAAGCC GATGCTGCAC
CGCCTGCTGG CCGCCATCGC CCAGCCGGCG CAATTTGGGG GGCACACGCT GCAGGTTTCA
GGCAGTCTGG GCGTGACCTT CTATCCGCAG GTGCAGGAAC TGGACGCCGA TCAGTTGCTG
CGCCAGGCCG ATCAGGCCAT GTACCAGGCC AAGCTGGCAG GCAAGAACCG CTACCGGTTC
TTCGGGGTCG AATAA
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| Protein sequence | MGRWHLTMKH AIHWNLWSPF IRNALLMAGL ISAGLAVWSH YGWMALGGLA ALALIVWQGT
RLFMTRRRLT EQYRLVLLQK KRLRESEFRW KFAIEGSGDG LWDWNVADGS VYFSAQYKQM
LGLTVDEMDQ RLQEWETRVH PDDKAGSLMA LQSHLDGQSP VYAAQYRMRC KDGSYKWILD
RGMVVSRSDA GKPLRMIGIH TDITVHKQAE EKLQLAASVF THALEGIMIT DAQGLIIDVN
QSFSRITGYE RDEVLGRNPH LLSSGRQSQA FYAAMWRDLQ EEGCWYGEVW NRRKSGEVYA
HLQNISAVRD AQGQTRQYVS LFSDNTALKA HQQQLQHLAH FDALTDLPNR LLLADRLHQG
MVQVQRRGQM LALAFVDLDG FKLINDSHGH EAGDHLLMTV ATRMKQALRE GDTLARLGGD
EFVAVMFDLA DEAACKPMLH RLLAAIAQPA QFGGHTLQVS GSLGVTFYPQ VQELDADQLL
RQADQAMYQA KLAGKNRYRF FGVE
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