| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1515 |
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| Symbol | |
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| ID | 3961130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1631762 |
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| End bp | 1632979 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637916335 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_522779 |
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| Protein GI | 89900308 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.498978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAAC CTCAAAATCT CGCCCCGCCC CGGCATGCTG CGGGCAACCC AGCGCGTAAA
AAGGCCTTGA GCGCCATTGC GGGCGTCGTT GTCATCGCGG GACTGGGCTG GGCCGCCTAC
GACTGGTTGG TGGCCAGCCA TTTTGAATCC ACCGACAACG CCTATGTCCA GGGCAACGTG
GTCCAGATCA CGCCGCAAAT TGGCGGTACG GTGGTCGCCA TCCTGGCCGA TGACACGGAC
TGGGTCAAAG CCGGACAGGC CCTGGTCAAA CTTGACCCGG CGGATGCCAC ACTGGCGCTC
GATCAAGCCA AAGCCAGTCT GGCGCAGACC GTGCGGCAGG TGCGCACGCT GTATGCCAAC
AACGCAAGCC TGCAGGCCCA AATCAGTCTG CGCGAGTCTG ACGTGGTCAA GGCCCAAACC
GAAATTGCGC GTGCCACCGA TGACCTGAAC CGCCGCCAAT CCCTGGCGGG TGAGGGGGCC
GTCTCGCGTG AAGAACTCAA CCACAGCCAG ACTCAGCTGG CCAACGCTAA GAGTGCGATG
GCCTCGGCTC TGGCGGGGGT CGCCACCGCC CGCCAACAAC TGGCCAGTAA CCAGGTCATG
ACCGAAGGCG TGAGTGTCGA ACAGCACCCG AGCGTGCAAG TGGCTGCTGC CAAAGTGCGT
GAGGCCTGGC TGGCCAAAGA GCGGGCCGTT TTGCCCTCGC CAGTGGACGG CTTCGTGGCT
CGGCGCAGCG TGCAGTTGGG CCAGCGCGTG GCGGCGGGCA CACCCTTGAT GTCCGTGATT
GCTCCCCAGC AGTTGTGGGT TGATGCCAAT TTCAAGGAGG TCCAGCTGCG TCATATCCGC
ATTGGTCAGA GCGTCGAATT GACGGCCGAT CTGTACGGCA AAAAAGTGGC CTACAAGGGC
GTGGTGAGCG GTCTGGGCAT GGGTACCGGC GCCGCCTTTG CCCTGTTGCC CGCGCAGAAC
GCGACCGGGA ACTGGATCAA GGTGGTGCAG CGCGTACCGG TGCGGGTGGC GCTGGACGCT
GGCGAGCTGG CAAAAAACCC CTTGCGAGTC GGTCTGTCGA TGATCGCCAC GGTCGATGTA
ACCCGACAAG ACGGCAAGAT GCTGGCCGAT GCGCCGCGTG ACGCCGCGCT GGTGCAAACC
GCTGTTTATG AAGCCCTTGA GCGTGGCGCA ACGCAAGAGG TGCAAAAAAT TGTCGCCGCC
AATCTGGGGC ACAGTTGA
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| Protein sequence | MTEPQNLAPP RHAAGNPARK KALSAIAGVV VIAGLGWAAY DWLVASHFES TDNAYVQGNV
VQITPQIGGT VVAILADDTD WVKAGQALVK LDPADATLAL DQAKASLAQT VRQVRTLYAN
NASLQAQISL RESDVVKAQT EIARATDDLN RRQSLAGEGA VSREELNHSQ TQLANAKSAM
ASALAGVATA RQQLASNQVM TEGVSVEQHP SVQVAAAKVR EAWLAKERAV LPSPVDGFVA
RRSVQLGQRV AAGTPLMSVI APQQLWVDAN FKEVQLRHIR IGQSVELTAD LYGKKVAYKG
VVSGLGMGTG AAFALLPAQN ATGNWIKVVQ RVPVRVALDA GELAKNPLRV GLSMIATVDV
TRQDGKMLAD APRDAALVQT AVYEALERGA TQEVQKIVAA NLGHS
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