| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1506 |
|---|
| Symbol | |
|---|
| ID | 3961121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1619687 |
|---|
| End bp | 1621174 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637916326 |
|---|
| Product | NADH dehydrogenase subunit N |
|---|
| Protein accession | YP_522770 |
|---|
| Protein GI | 89900299 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1007] NADH:ubiquinone oxidoreductase subunit 2 (chain N) |
|---|
| TIGRFAM ID | [TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.523912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGACA AACTCAGCTG GATTTCGGTT TACCCTGAAA TCGTCCTGCT TATTATGGCT
TGCGTCATCG CGCTGGCCGA TCTTGGCGTG AAAAGCCCGC GCCGCACACA GACCTATTTG
CTGTCCCTGC TGACCCTGGC AATCGTTGCA GCTTTGCAGG CGAGTTACGC CGTTGGCGGT
GTGACCGTCT ACGGTTTTGG CAATATGGTG GTCAGCGATC CCATGGGCAA CTGGCTCAAG
TGCTTTGCGA CCATTGCCGT CATGGTTACC TTGGTCTATG GCCGACCCTA CGCGGCTGAT
CGCGACATGT TGCGCGGTGG CGAGATGTTC TCCTTGAGCC TGTTTGGCCT GTTAGGCATC
TTTGTCATGA TCTCCGGCAA TAATTTCCTG GTGATCTACC TGGGGCTTGA GTTGCTGACG
CTGTCGAGCT ATGCGCTGGT GGCTTTGCGA CGCGACAATG CCACGGCCAC TGAAGCCGCC
ATGAAGTATT TTGTGTTGGG GGCGCTGGCG TCGGGTTTCC TGTTGTACGG ACTGTCAATG
ATGTATGGCG CCACCGGCTC GCTGGATGTG AATGCTGTGT TCAGGGCTAT TAATTCCGGC
CAGATTAAAC ATCAGGTGTT GGTGTTCGGT TTGGTGTTTG TGGTGTCGGG CCTCGCTTTC
AAGCTTGGCG TGGTGCCATT CCATATGTGG ATCCCTGATG TGTACCAGGG TTCCCCCACC
GCTGTGACCC TGCTCATCGC CGGCGCACCC AAGCTGGCAG CCTTTGCCAT CTGCATTCGG
TTGCTGGTTG AGGGCATGCT GCCATTGGCC ATTGACTGGC AGCAGATGTT GATGGTGTTG
TCCGTCGGCT CGCTGTTGAT TGGTAATCTG GCCGCCATTG CGCAGACCAA TCTCAAGCGT
ATGCTGGCGT TCTCGACGAT TTCGCACATG GGTTTTGTAT TGCTGGGTCT GATGTCTGGC
GTGGTGAACG GTGATGTCCA CTATGCAGCA AATGCCTACA GCTCTTCCAT GTTTTATGTC
ATCACCTACG TGTTGACAAC GCTGGCAAGT TTTGGCGTGA TTCTTTTACT GGCCCGCGAC
GGTTTTGAAA GTGAAGAGAT TTCTGATATG GCCGGTCTGA ACGAGCGCAG CCCGCTTTAT
GCTGGCGTGA TGGCGGTCTG TCTATTTTCA TTGGCTGGCA TCCCGCCCAT GGTCGGTTTT
TATGCCAAGC TCGCGGTGTT ACAGGCGCTG GTCGCCTCCG GCGGCGTCTT TCATATCGGT
TTGGCCGTAT TTGCCGTCAT GATGTCGCTG ATTGGCGCCT TCTATTACTT GCGTGTCATC
AAGGTGATGT ACTTTGACAA GCCGCTGACG GCAGGTACCA TGTCTGCACC TTTCGATGTA
CGCGCTGTGT TGTCTCTGAA CGGCGCGTTG CTTCTGGTCC TCGGCCTATT GCCTGGTGGT
CTGATGGCTT TATGCGCCAA TGCGGTTGTG CAAATGCTGG GCACCTGA
|
|---|
| Protein sequence | MIDKLSWISV YPEIVLLIMA CVIALADLGV KSPRRTQTYL LSLLTLAIVA ALQASYAVGG
VTVYGFGNMV VSDPMGNWLK CFATIAVMVT LVYGRPYAAD RDMLRGGEMF SLSLFGLLGI
FVMISGNNFL VIYLGLELLT LSSYALVALR RDNATATEAA MKYFVLGALA SGFLLYGLSM
MYGATGSLDV NAVFRAINSG QIKHQVLVFG LVFVVSGLAF KLGVVPFHMW IPDVYQGSPT
AVTLLIAGAP KLAAFAICIR LLVEGMLPLA IDWQQMLMVL SVGSLLIGNL AAIAQTNLKR
MLAFSTISHM GFVLLGLMSG VVNGDVHYAA NAYSSSMFYV ITYVLTTLAS FGVILLLARD
GFESEEISDM AGLNERSPLY AGVMAVCLFS LAGIPPMVGF YAKLAVLQAL VASGGVFHIG
LAVFAVMMSL IGAFYYLRVI KVMYFDKPLT AGTMSAPFDV RAVLSLNGAL LLVLGLLPGG
LMALCANAVV QMLGT
|
|---|
| |