| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1485 |
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| Symbol | |
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| ID | 3960926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1597428 |
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| End bp | 1599458 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637916304 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_522749 |
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| Protein GI | 89900278 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.10947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCAGC AGACGCTGCC GCGCCATGCC AGCCGCAACC GACGCACGCT TTTGTGGCTG
TTGGGTTTGT TGCTGTTGCT GGTGGGCGCG GTGGTTACCC TGGTGCTGTA CCTGAATAAC
TTTGAGGCCG AAGAAGAGAC GCGCCGTCGC GCCGCCGACG CGCAGTGGCT GGAGCAGAGC
GTGCAGTTTC ACTTTCGTCG ACTGGAAGAC GACTTGCTGG TATTGGCCCG TCAGTCCGTC
CTGGGCGACG CAAGTGCCCG GTCCAAGAAG GCCAAGAGTG TTGAAGTACA AGGCGGTTTG
CTATGGCGCG AGCCCGGCGT GGTGTTGTCG CATGGCTGGC TGGCGGCTGG CCTGTCCCCT
GATGCCCGGG TGGGGCCGCA GCGCTGGCAA CTGGACTGGG CGGCGCACCC AGCCAATGCG
CAGGCGCTCG CCACCATGCA GGACACCACG CGCGGTCTGC GGCGCTCGGC TTACGCCGGA
CTGATGCAGC AAGCTGACGG GTCCTTGACG GATGTGGTCT GGCTGGCTGT GCCGTTCTTT
GATCGCGGCC AGTTTGTGGG CAATTACCTG GCCGCCGTGT CGCTGGAGCG TGCGGTGCGG
TCCTTGGTGC CCGCCTGGTT TGCGCAAAAC CACAGCGTGC GGCTGGTCGC TGATGACATT
GATGCGGCAC CTGCGCAGGC GTCGGCTGCT CATTCGTACC GGGCCAGCAT GAATTTGCCA
GGGCCAGACT TGTTCCTGGA GGTCGCCCCC ATCGGCGAGC AGCCGACCAC GGTGCCGCGT
ATCTTCTTTT TGGTGGCGCT GCTTTTTTTG CTGGGGATGC TGATCAGCCT GGTGGCGCTG
CGGCGCGACT TTGTCAAACG CCAGCAGGTG CAGGCCCGCT TGCAAGCCGA GGTGGCCTTG
CGCACCGCCA TGGAGAATTC GGTCACCATC GGCCTGCGGG CCTGGGACCA GCACGGCAAA
ATCCTGTACG TGAATCAAGC TTTTTGCAAC ATGGTGGGCT ACCCGGCGAC CGCTCTGCTG
GGCAAGTCTG CCCCCATGCC GTACTGGCCA GCCGATCAGG CCAATGAACT TCAGCTGGTG
CACCGCGACA TCATTGTTCA GGGTACGCAA GGCGACGGCG TAGAACTGCA GTTTCAACAC
CGCAGCGGGA AACTGTTGGA TGTGTTGATT CATGAAGCAC CGCTTACCAC CGTCAATGGC
GAGCAGCTCG GCTGGATGAG CTCCGTATTG GATATCAGTG AGCGCAAGCG GGCGCAACGC
ATGGCGACCC TGCAGCAAGA AAAACTCGAA GCGTCGGGGC GTCTGGTGGC CGTTGGAGAG
GTTGCCTCCA CCCTGGCGCA TGAGCTCAAT CAGCCGCTGG GTGCGCTCAG CAGCTTTGCC
AACGGGCTAC TCAATCGTCT GCGCGGGGGC AACATCAGGT TGGACGAGTT GGAGCCGGTG
GTGGCGCGCA TGGCGCGTCT GGCGGAGCGC GCGGGGGGCG TCATTCAGCG CGTCAATGCC
TTTGCGCGCC GGCGTGAACT TTCCCGTCAG CACCTGGACG TGGTGGCGGT CTTGCGGCGC
GTTCTCGCCA GCACGGCAGA CGCGCAGACA CGCCAGGTGT CGCTGGTGGA TAACAATCAG
GCGATCTGGA TTGATGCGGA CGAATTGCTC CTGGAGCATC TGATCAACAA CCTGGTGGAT
AACGCCCTGC ACTGGGCCCA TCGGGGTCCG GGTTTGGCGC AGGTGCGGGT CGAAATGGCC
TGCGACCGGT CCCAAGGTCT CGCTACCCTG GTGGTGGCTG ATTCCGGCCC TGGGGTGACG
GAAGAGAATG GGGTGAATAT TTTTAATGCT TTTTTCAGCA CCAAGGAAGG CGGCATGGGC
ATGGGTCTGG CCATCTGCCG TTCTATTGTG GAAGCCCATC ATGGGCGGAT CGAGGTCGGG
CGTGACCCCG AGTTGGGCGG TGCGCGCTTT GTTGTTTGGC TGCCGCTAGC CGAAGTGCCC
TTGATCGCGC CAATTTTGCC CACCTTGCTC GTTGCCCAAG GAGTCCCATG A
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| Protein sequence | MLQQTLPRHA SRNRRTLLWL LGLLLLLVGA VVTLVLYLNN FEAEEETRRR AADAQWLEQS
VQFHFRRLED DLLVLARQSV LGDASARSKK AKSVEVQGGL LWREPGVVLS HGWLAAGLSP
DARVGPQRWQ LDWAAHPANA QALATMQDTT RGLRRSAYAG LMQQADGSLT DVVWLAVPFF
DRGQFVGNYL AAVSLERAVR SLVPAWFAQN HSVRLVADDI DAAPAQASAA HSYRASMNLP
GPDLFLEVAP IGEQPTTVPR IFFLVALLFL LGMLISLVAL RRDFVKRQQV QARLQAEVAL
RTAMENSVTI GLRAWDQHGK ILYVNQAFCN MVGYPATALL GKSAPMPYWP ADQANELQLV
HRDIIVQGTQ GDGVELQFQH RSGKLLDVLI HEAPLTTVNG EQLGWMSSVL DISERKRAQR
MATLQQEKLE ASGRLVAVGE VASTLAHELN QPLGALSSFA NGLLNRLRGG NIRLDELEPV
VARMARLAER AGGVIQRVNA FARRRELSRQ HLDVVAVLRR VLASTADAQT RQVSLVDNNQ
AIWIDADELL LEHLINNLVD NALHWAHRGP GLAQVRVEMA CDRSQGLATL VVADSGPGVT
EENGVNIFNA FFSTKEGGMG MGLAICRSIV EAHHGRIEVG RDPELGGARF VVWLPLAEVP
LIAPILPTLL VAQGVP
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