Gene Rfer_1481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1481 
Symbol 
ID3964306 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1593203 
End bp1594486 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content60% 
IMG OID637916300 
ProductTRAP dicarboxylate transporter- DctM subunit 
Protein accessionYP_522745 
Protein GI89900274 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1593] TRAP-type C4-dicarboxylate transport system, large permease component 
TIGRFAM ID[TIGR00786] TRAP transporter, DctM subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.16562 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCCG CCATTATTTT TGTCCTCTTG CTGGTGCTCA TGCTCACCGG CATGCCAATC 
TCGATTTCAC TCGGCTTGAC CGTTCTGACC TTTTTGTTTG GCTTTACCCA TGTGCCGCTG
GAGTCGGTGG CGCTCAAGCT CTTTACCGGC ATTGAAAAGT TCGAGATCAT GGCGATCCCG
TTCTTCATCC TGGCGGGTAA CTTTTTGACC CACGGCGGCG TGGCCAAGCG CATGATCAAC
TTTGCCTCCA GCATGGTCGG CCACTGGTAT GGAGGCCTGG GCCTGGCCGG TGTGATGGCT
TGTGCCCTGT TTGCGGCGGT GTCGGGTTCC TCGCCCGCCA CGGTGGTGGC GATCGGCTCG
ATCTTGCTGC CGGCCATGAC CAAAGCGGGT TTTCCGAAAA GCTTCGGTGC CGGCGTCATC
ACCACTTCCG GCGCGCTGGG CATTCTGATT CCGCCTTCGA TCGTGATGGT CATGTATTCG
GTGGCGACCA ACACCTCGGT TGGCGCGCTG TTCATGGCCG GCGTGGTACC TGGCATCGCA
CTGGCCTGCG TGTTGGGCGG GGTCACCTGG TATCGGGCCA AGAAGTTCAA CTACCCGCGT
CTGCCCAAGG CAACCTGGGC CGAGCGCTTC AAGGCTTTCA AGACCTCGGC CTGGGGCTTG
CTGCTGATCG TGATCGTGAT GGGCGGCATT TACACCGGCA TGTTCACGCC GACTGAAGCG
GCGGCCATGA GCGCGGTCTA TGCGTTTGTG GTGGCGGTGT TTGTCTACAA AGACATGAGG
CTCAAGGACG TGCCCAAAGT GTTGCTCAAC TCGGCCAACA TGTCGGCGAT GCTGCTCTAC
ATCATCACCA ACGCCGTGCT GTTCTCGTTC ATTATGACCA ATGAGAACAT TCCGCAGGCG
CTGGCCGACT GGATGCTGGG CAACGGCCTG GGCATGGTGA CCTTCTTGCT GGCCGTGAAC
GTGATGCTGC TGCTGGCGGG CAACTTCATG GAGCCCTCCA GCATAGTGCT GATCTTCGCG
CCGATCTTGT TCCCGGTGGC GATGAAGCTG GGCATTGACC CGGTGCACTT TGGCATCATC
ATGGTGGTGA ACATGGAAGT GGGCATGTGC CACCCGCCGG TGGGCCTGAA CCTGTATGTG
GCCTCCGGCA TCACCAAGAT GGGGATTACC GAGCTGACGG TGGCGGTCTG GCCGTGGCTG
CTGGCGATGC TGGGCTTCCT GGTGCTGGTG ACCTACTGGC CGCCCTTGTC AACCTGGTTC
CCACGCATGC TGGGAATGAT GTAG
 
Protein sequence
MNAAIIFVLL LVLMLTGMPI SISLGLTVLT FLFGFTHVPL ESVALKLFTG IEKFEIMAIP 
FFILAGNFLT HGGVAKRMIN FASSMVGHWY GGLGLAGVMA CALFAAVSGS SPATVVAIGS
ILLPAMTKAG FPKSFGAGVI TTSGALGILI PPSIVMVMYS VATNTSVGAL FMAGVVPGIA
LACVLGGVTW YRAKKFNYPR LPKATWAERF KAFKTSAWGL LLIVIVMGGI YTGMFTPTEA
AAMSAVYAFV VAVFVYKDMR LKDVPKVLLN SANMSAMLLY IITNAVLFSF IMTNENIPQA
LADWMLGNGL GMVTFLLAVN VMLLLAGNFM EPSSIVLIFA PILFPVAMKL GIDPVHFGII
MVVNMEVGMC HPPVGLNLYV ASGITKMGIT ELTVAVWPWL LAMLGFLVLV TYWPPLSTWF
PRMLGMM