Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1481 |
Symbol | |
ID | 3964306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 1593203 |
End bp | 1594486 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637916300 |
Product | TRAP dicarboxylate transporter- DctM subunit |
Protein accession | YP_522745 |
Protein GI | 89900274 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.16562 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCCG CCATTATTTT TGTCCTCTTG CTGGTGCTCA TGCTCACCGG CATGCCAATC TCGATTTCAC TCGGCTTGAC CGTTCTGACC TTTTTGTTTG GCTTTACCCA TGTGCCGCTG GAGTCGGTGG CGCTCAAGCT CTTTACCGGC ATTGAAAAGT TCGAGATCAT GGCGATCCCG TTCTTCATCC TGGCGGGTAA CTTTTTGACC CACGGCGGCG TGGCCAAGCG CATGATCAAC TTTGCCTCCA GCATGGTCGG CCACTGGTAT GGAGGCCTGG GCCTGGCCGG TGTGATGGCT TGTGCCCTGT TTGCGGCGGT GTCGGGTTCC TCGCCCGCCA CGGTGGTGGC GATCGGCTCG ATCTTGCTGC CGGCCATGAC CAAAGCGGGT TTTCCGAAAA GCTTCGGTGC CGGCGTCATC ACCACTTCCG GCGCGCTGGG CATTCTGATT CCGCCTTCGA TCGTGATGGT CATGTATTCG GTGGCGACCA ACACCTCGGT TGGCGCGCTG TTCATGGCCG GCGTGGTACC TGGCATCGCA CTGGCCTGCG TGTTGGGCGG GGTCACCTGG TATCGGGCCA AGAAGTTCAA CTACCCGCGT CTGCCCAAGG CAACCTGGGC CGAGCGCTTC AAGGCTTTCA AGACCTCGGC CTGGGGCTTG CTGCTGATCG TGATCGTGAT GGGCGGCATT TACACCGGCA TGTTCACGCC GACTGAAGCG GCGGCCATGA GCGCGGTCTA TGCGTTTGTG GTGGCGGTGT TTGTCTACAA AGACATGAGG CTCAAGGACG TGCCCAAAGT GTTGCTCAAC TCGGCCAACA TGTCGGCGAT GCTGCTCTAC ATCATCACCA ACGCCGTGCT GTTCTCGTTC ATTATGACCA ATGAGAACAT TCCGCAGGCG CTGGCCGACT GGATGCTGGG CAACGGCCTG GGCATGGTGA CCTTCTTGCT GGCCGTGAAC GTGATGCTGC TGCTGGCGGG CAACTTCATG GAGCCCTCCA GCATAGTGCT GATCTTCGCG CCGATCTTGT TCCCGGTGGC GATGAAGCTG GGCATTGACC CGGTGCACTT TGGCATCATC ATGGTGGTGA ACATGGAAGT GGGCATGTGC CACCCGCCGG TGGGCCTGAA CCTGTATGTG GCCTCCGGCA TCACCAAGAT GGGGATTACC GAGCTGACGG TGGCGGTCTG GCCGTGGCTG CTGGCGATGC TGGGCTTCCT GGTGCTGGTG ACCTACTGGC CGCCCTTGTC AACCTGGTTC CCACGCATGC TGGGAATGAT GTAG
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Protein sequence | MNAAIIFVLL LVLMLTGMPI SISLGLTVLT FLFGFTHVPL ESVALKLFTG IEKFEIMAIP FFILAGNFLT HGGVAKRMIN FASSMVGHWY GGLGLAGVMA CALFAAVSGS SPATVVAIGS ILLPAMTKAG FPKSFGAGVI TTSGALGILI PPSIVMVMYS VATNTSVGAL FMAGVVPGIA LACVLGGVTW YRAKKFNYPR LPKATWAERF KAFKTSAWGL LLIVIVMGGI YTGMFTPTEA AAMSAVYAFV VAVFVYKDMR LKDVPKVLLN SANMSAMLLY IITNAVLFSF IMTNENIPQA LADWMLGNGL GMVTFLLAVN VMLLLAGNFM EPSSIVLIFA PILFPVAMKL GIDPVHFGII MVVNMEVGMC HPPVGLNLYV ASGITKMGIT ELTVAVWPWL LAMLGFLVLV TYWPPLSTWF PRMLGMM
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