| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1456 |
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| Symbol | |
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| ID | 3962903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1564803 |
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| End bp | 1566713 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637916274 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_522720 |
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| Protein GI | 89900249 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATTTGA AAGCCGTTGT GCTTTGCGGG TTGACCTGCG TGCTGGGCCT GCTGGCACCC
GCGCTGCACG CATCCCCCAG CTCGGCAGAC GCCAGTTTTC CGGTTTTTGA GGTGTCAGCT
CAGACACCCG GTCGCATTGA CGTAGACACC CGCATGGGCA TGTTGACGGA CAGTACCCGA
ACCCTGACAC CTGACCAGGT CATGTCGCCC AAGCAAACCT GGCAGACCAT CACCCGAAAA
TCGCCCAACT TTGGTTTCAC CGAAGACGCC TACTGGTTTC GCTTCCAGAT CGACAACCTC
GCAAGCCAGG ACCTTGCACG TTTCGTCGAG TTGCCAATCC CCTTCCTTGA TGACGTGCAG
CTGTACCACT ACACGGCCGG CCAGCTCAAA ACCAGCTACG CCCTGGGTGA TGAAAAGCCC
TTTGCACAGC GAGTACTTCG ACACCAAAAT TTCGTCATGC CCCTGAATCT GGCGCCCGGG
GCCAATTTGA TCTACATCCG CCTGGCCTCA TCGGGCACGA TTGAAGCACC TTTTCGAATC
TGGGATCCGA CCCAGTTTTA TGAGACCAAC GGTAACGAAA AATTATTACA GGGCATGGTG
ATCGGCATCC TGCTGATCAT GATTGTCTAC AACCTGTTTG TCTACTTTTC AACCCGCGAC
ATCAACTACC TTTTTTACAT TGGATTTGTC GCGAGCTACC TGCTCTTTCA TCTCACCTTG
AACGGCTACA CCTTTGCCTA TGCCTGGCCC AACGCGGTGC GTTGGAACAG CTTTGCCATC
TCCACCTTTA TGGCCAGTGC AGAGTTGTTC ACCTGTCTTT TTGCCGACGG CTTTCTCAGG
CTGAGCAAGT TTTCAAGGCC AGCGCACTAC CTGACACGGG CACTGGCAAC AGTCAGCGCC
CTGCTGTTGG CGCTGACCTT TGTTTTGCCC TACAGCCTGA CGGTGCGTGT GGGCGCCGCC
CTCACCATCC CCATTGCTTT GACCGCGTTG GCGCTGGGCT ACTGGCGGTG GTGGCGCGGC
GCCAAATTCG CGCGCTTTTA TTGCCTTGCC TGGACCACCG TGCTCATTAG CCTGTGCGTC
CTGAATGCCA GCAAATTTGG TTTGATACCG TCCAACGCCT GGACCCACAA TGCGTCCCAG
ATTGGCATTG TCTTGTTGGT GCTTTTGCTG TCATTTACGC TGGCCGACCG GATCAACCAT
GATCGCATGC TCAGGGTCAA CGCGCAGGCT GTGGCATTGG GCCATGAACG CTGGGCGCGC
GCCTCTCAAG AAGCGCTGAT CAAGACCAAG GAAGATGCCA ACCGCGAACT GGAACAACGG
GTCACGGCGC GCACCAATGA CCTGAACCGA ACGCTGGGTC AACTCAAGCT GGCCAACGAC
CAGCTGCAAC GCCTGTCCAA CATGGACGGA CTGACCCAAA TCGGCAACCG CGCGTTCTTC
GACCGCGCCT TGGCCCTGGA ACATCGGCGG GCTGACCGAC AGAAAAGTCC GCTGTCGCTG
ATCATGATTG ACGTTGATCA CTTCAAGCTG GTCAATGACA GCTACGGTCA TATGGGCGGT
GACGCTTGCC TGCGCGCCGT GGCCCATTTG CTGCAACCCC GGATTCAACG TGTCGGTGAT
GTGCTGGCGC GTTATGGTGG AGAGGAATTT GTCATTCTGC TGGTTAACAG CAACCAGCAG
GATTCGGTGG CGCTGGCCGA GGGATTTCGC GCGGACATCG AGCAACTGCA TGTGCCTTTT
GAAGGCGGCA CGATTCACGT CACCGCCAGC TTTGGCGTGG CCTGTGGCAT ACCCGACCAG
TACCTTAGCC CACAGGAGTT GTTGGCCCAC GCTGACAAAG CGCTTTATCA GGCCAAGCAT
GACGGGCGCA ATTGCGTCCG GTCTGTGGCG ACGATCAACC GTGTGAGCTG A
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| Protein sequence | MNLKAVVLCG LTCVLGLLAP ALHASPSSAD ASFPVFEVSA QTPGRIDVDT RMGMLTDSTR
TLTPDQVMSP KQTWQTITRK SPNFGFTEDA YWFRFQIDNL ASQDLARFVE LPIPFLDDVQ
LYHYTAGQLK TSYALGDEKP FAQRVLRHQN FVMPLNLAPG ANLIYIRLAS SGTIEAPFRI
WDPTQFYETN GNEKLLQGMV IGILLIMIVY NLFVYFSTRD INYLFYIGFV ASYLLFHLTL
NGYTFAYAWP NAVRWNSFAI STFMASAELF TCLFADGFLR LSKFSRPAHY LTRALATVSA
LLLALTFVLP YSLTVRVGAA LTIPIALTAL ALGYWRWWRG AKFARFYCLA WTTVLISLCV
LNASKFGLIP SNAWTHNASQ IGIVLLVLLL SFTLADRINH DRMLRVNAQA VALGHERWAR
ASQEALIKTK EDANRELEQR VTARTNDLNR TLGQLKLAND QLQRLSNMDG LTQIGNRAFF
DRALALEHRR ADRQKSPLSL IMIDVDHFKL VNDSYGHMGG DACLRAVAHL LQPRIQRVGD
VLARYGGEEF VILLVNSNQQ DSVALAEGFR ADIEQLHVPF EGGTIHVTAS FGVACGIPDQ
YLSPQELLAH ADKALYQAKH DGRNCVRSVA TINRVS
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