| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1412 |
|---|
| Symbol | |
|---|
| ID | 3962330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1520769 |
|---|
| End bp | 1521278 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637916228 |
|---|
| Product | oligoribonuclease |
|---|
| Protein accession | YP_522676 |
|---|
| Protein GI | 89900205 |
|---|
| COG category | [A] RNA processing and modification |
|---|
| COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.118858 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGTC TTGATCCGGA GATTGAGCGG ATCATTGAGA TTGCCGTGAT CGTCACCGGC
CCCGATCTTG AATGCCGAAT CGAGGGCCCG GTGCTGGTGA TCCATCAAAG CGATGAACTG
CTTGACAAGA TGGACCAATG GAACAAAGGC ACGCATGGCA AAACGGGCCT GATCGACAAG
GTCAAAGCCT CGACCTTGCT GGAGGCGCAG GCTGAGGCGC AGATCATCGA ATTCCTGAGT
CAGTATGTGC CCAAGAAGGG CGCCCCCATG TGTGGCAACA GCATCGGGCA GGATCGGCGT
TTTCTGGCGA AGTACATGCC CAAGCTGGAG GCTTTTTTTC ACTACCGCAA CCTGGATGTG
AGCACACTCA AAGAGCTGTC CAAACGCTGG CGCCCCGATG TGTACAAATC GTTCAAAAAG
AAGCAGCGCC ACACGGCGTT GGCCGATGTG CACGAGTCGA TTGACGAACT GGAGCACTAC
CGGAAACACT TCATCAGGAT GGCTGATTAG
|
|---|
| Protein sequence | MTGLDPEIER IIEIAVIVTG PDLECRIEGP VLVIHQSDEL LDKMDQWNKG THGKTGLIDK
VKASTLLEAQ AEAQIIEFLS QYVPKKGAPM CGNSIGQDRR FLAKYMPKLE AFFHYRNLDV
STLKELSKRW RPDVYKSFKK KQRHTALADV HESIDELEHY RKHFIRMAD
|
|---|
| |