| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1404 |
|---|
| Symbol | trmD |
|---|
| ID | 3962322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1513846 |
|---|
| End bp | 1514592 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637916220 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_522668 |
|---|
| Protein GI | 89900197 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTTG ACATCGTTAC GCTGTTTCCC GAGCTATTCG CCCCATTTTT GACCAGTGGC
ATTACGCGAC GCGCGTTTGA GTCGGGTTTG GTCGATGTCC AACTGGCCAA CCCGCGTGAT
TTTGCGGCAG GCAATTACAG GCGGGTCGAT GACCGTCCGT TTGGCGGTGG CCCGGGCATG
GTCATGATGG CCGAGCCCTT GGCACAATGC CTGAAGAGCA TCCAGTCTCA ACGAACCGAA
ATCGCCCCGG TGCTGCTTTT TTCGCCTGCG GGCCAGACGC TGAACCATGC CATGGTGCAG
CGTTGGTCCG ACAGCCAGGG TGCGATCCTG ATTTGTGGCC GCTACGAAGG CCTGGATCAG
CGCTTTATCG ATGCCTATGT CACCGAGCAG ATCAGCCTGG GTGACTTTGT CCTGTCGGGT
GGCGAAATTG CGGCCATGGC CTTGCTCGAT GCCGTGGCGC GCCTGCAACC CGGTGTATTG
AATGCGGCTG ACAGTCACCA GCAGGATAGC TTTAACCCCG TATTGGACGG CTTGCTGGAT
TGCCCGCACT ACACCCGGCC TGAGAACTGG TTGGGTCGGC CAGTGCCGGA GGTGCTGCTG
TCGGGGCACC ATGTCCAGAT TGAGCGCTGG CGGCGCGAAC AGCGGCTGGC GCTGACTTTG
CGTTTGCGCC CTGAATTGAT CGACCAGGCG CGTCGGGATG GGCGTTTGAG TCGCGCCGAT
GAAGCCTTTC TGGCCAGCCA AGTCTGA
|
|---|
| Protein sequence | MRFDIVTLFP ELFAPFLTSG ITRRAFESGL VDVQLANPRD FAAGNYRRVD DRPFGGGPGM
VMMAEPLAQC LKSIQSQRTE IAPVLLFSPA GQTLNHAMVQ RWSDSQGAIL ICGRYEGLDQ
RFIDAYVTEQ ISLGDFVLSG GEIAAMALLD AVARLQPGVL NAADSHQQDS FNPVLDGLLD
CPHYTRPENW LGRPVPEVLL SGHHVQIERW RREQRLALTL RLRPELIDQA RRDGRLSRAD
EAFLASQV
|
|---|
| |