| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1334 |
|---|
| Symbol | |
|---|
| ID | 3961365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1436129 |
|---|
| End bp | 1437373 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637916149 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_522599 |
|---|
| Protein GI | 89900128 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.413147 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTG TTGATGATTT CCGCCTGAAG TTCGGAAAAA AAGAGTTTGT CCCGATCATC
GTCGGTGGCA TGGGTGTTGA TATTTCAACC GCCGAACTGG CCCTGGAAAC CGCCCGGCTT
GGCGGCATCG GCCATATCTC TGATGCTATG GTGCCCGACG TGTCGGATCG TCGCTTTGAC
ACCAGTTTCG TCAAAGACAA GACCCGTTTC TACAAGGCCA ACATCGACAA CTCCGACAAG
TCCATCATCA AGTTCGATCT GGGTGTGCTG GCCGAGGCCA CCCGGCGCCA CGTTGAAGCC
ACCATGCAGG CCAAGGGGAG CGAGGGCCTG ATTTTTGTCA ACTGCATGGA AAAGCTGACC
ATGAACGGGC CGCGCGAGAC CTTGCAGGTG CGCATGGCGT CCGCGTTGGA TGCCGGCATT
GATGGCATTA CCTTGAGCGC CGGTTTGCAC CTGGGCTCGT TTGGGCTTAT TGCAGACCAT
CCCCGCTTTC GCGATGCCAA GCTGGGCATC ATCGTGTCCT CGGTGCGCGC CCTGCAGTTG
TTTTTGCGCA AGAACGCCAG GTTGGAGCGC AAGCCCGATT ATGTGATTGT GGAAGGCCCG
CTGGCCGGGG GCCATTTGGG TTTTGGCATG GACTGGGCGC AATACGATCT GGCCACGATC
GTGGCTGAAG TGGTGCAGTT CATGAAAACC GAGCACCTTG ATATTCCGGT GATTGCAGCC
GGAGGCATCT TTACCGGCAG CGACGCGGTG TCGTTCCTGG AGCAGGGTGT GGCCGCCGTG
CAGGTGGCGA CCCGGTTTAC CGTGGCCAAT GAGTGTGGTT TGCCCGCCGA GGTCAAGCAG
GATTACTTCA GAGCCAGCGA GGCTGACATT GTGGTCAACA CGATCTCGCC GACCGGCTAC
CCGATGCGCA TGCTCAAAGG CTCGCCGGCC ATTGGCGCTG GCATCCGTCC CAATTGTGAG
GCTTACGGTT ATTTGCTGGA TGGCAACGGC AACTGTGCCT ACATCACCGC CTACAACCGG
GAAGTGGCCT TGCACCCGGA TTCCAAAACC ATCTCGGTCA TGGACAAAAC CTGCCTGTGC
ACCCACATGC GCAACTTCAA GCTCTGGACT TGCGGCCACT ACACCTACCG TCTCAAGGAC
ACAACCCGGC GCCTGGCCGA TGGCAGTTAC CAGACTTTGA GTGCCGAGCA CATTTTCAAA
GACTACCAGT TCAGCGTCGA TCAGAAAGTG GCCCTGCCGG TTTGA
|
|---|
| Protein sequence | MKRVDDFRLK FGKKEFVPII VGGMGVDIST AELALETARL GGIGHISDAM VPDVSDRRFD
TSFVKDKTRF YKANIDNSDK SIIKFDLGVL AEATRRHVEA TMQAKGSEGL IFVNCMEKLT
MNGPRETLQV RMASALDAGI DGITLSAGLH LGSFGLIADH PRFRDAKLGI IVSSVRALQL
FLRKNARLER KPDYVIVEGP LAGGHLGFGM DWAQYDLATI VAEVVQFMKT EHLDIPVIAA
GGIFTGSDAV SFLEQGVAAV QVATRFTVAN ECGLPAEVKQ DYFRASEADI VVNTISPTGY
PMRMLKGSPA IGAGIRPNCE AYGYLLDGNG NCAYITAYNR EVALHPDSKT ISVMDKTCLC
THMRNFKLWT CGHYTYRLKD TTRRLADGSY QTLSAEHIFK DYQFSVDQKV ALPV
|
|---|
| |