| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1331 |
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| Symbol | |
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| ID | 3961362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1430013 |
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| End bp | 1433540 |
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| Gene Length | 3528 bp |
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| Protein Length | 1175 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637916146 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_522596 |
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| Protein GI | 89900125 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.54754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCACGCA TTGGCGCTTT AGCCACCACC TGCCCTGCAT TCATGGAATT ACCCAAACTC
ATCCCCGGCA AGCGCTTCAC CCTGCCGCGC CCGGTCGGCT CAGCCGATGC GCTCTTACTG
GCCCAACTGG GGCTGCGCGA GAAGAGCCAG CACAAGGTCA CGGCCATCAT CACGGCCGAT
GCCCTGGACG CGCAGCGCCT GATCGACGAA ATGGCGTTCT TTGCGCCCGA GCTGCGTTGC
GTTCTGTTTC CGGATTGGGA GACTTTGCCC TACGACACCT TTTCACCGCA CCAGGACCTG
ATCAGCGAGC GCCTGGCCAC CTTGTGGCGC ATCAGCCAGC GCAACAAAGA AACCGGCGCC
GATGTCGTGC TGGTGCCCGC CACCACCGCG CTCTACCGGC TGGCACCCCC GTCTTTTCTG
GCCGGCTATA CCTTTCACTT CAAGGTCAAA CAAAAACTCG ACGAAGCCAA ACTCAAGGCC
CAATTGACGC TGGCCGGCTA CAGCCACGTG ACGCAAGTGG TGAGCCCGGG CGAATACGCG
GTGCGCGGCG GCCTGATCGA CCTGTTTCCG ATGGGCAGCG CCGTGCCCTA CCGCGTTGAT
TTGTTTGACG ACGAGATCGA CAGCATCCGC ACCTTTGACC CCGACAGCCA GCGCAGCCTG
TACCCCGTGC CCGAGGTGCG CCTGCTGCCC GGGCGCGAGT TCCCGATGGA CGACGAGGCG
CGCGCGCGCT TTCGCAACCG CTGGCGTGAG TTGCTGGAGG GCGACCCGAC CCGCAGCCGC
ATCTACAAAG ACATCGGCAA CGGCGTTGCC ACCGCCGGCA TTGAGTACTA CCTGCCGCTG
TTTTTTGACG ACACCGCCAC GGTGTTTGAC TATTTGGGTG AGGCTGCCAC GGTGGTGCTG
CACGGCGACC TGGAGCCCGC CTTTGCCCAC TTCTGGCAAG ACACGCGCGA GCGCTACCGG
CTGGTGCAAG GCGACCCGGA GCGCCCGGTG CTGCCACCGG GAGCCCTGTT TTTAAGCACC
GAGCAGTTCT ACGAGCGGGT CAACCAGCAT GCGCAACTGG CCTTGCGGCC CGCCCTGGAC
ACTGCCAGCG CCTACGCCGA GTTTGAGGCG CTGCCGCCCT TGAGCGTGGT GCGCGGCGCC
GAAGACCCGC TGGCCCGCCT GAAGGCCCAC ATCCGAAACA CCCAGCAGCG CACCCTGGTG
CTGGCCGAAA GCGAGGGCCG GCGCGCCAGT CTGCTGGACT TCTTGCACAG CAGCCAGTTC
GACCCGCCGG CGTTTGACTC GCTGGCGGAA TTCGAGCGCA GTGATGAGCC GATCGGCATC
GCCACCTCCA GCCTGAGCGC GGGCTTTGGC TGGCTGGAAG CGGGCATCGA CTTCGTCACC
GAAACCGAAC TCTTTGCCGC CGGCCCGACC ACGCGACGGC GCAAAAAACA GGAACAGGTC
AGTGACGTCG AAGCCCTGAT CAAAGACCTG AGCGAGCTCA ACATCGGCGA CCCGGTGGTG
CACTCGGCCC ACGGCATTGG CCGCTACCGC GGCCTGATCA ACCTGGACCT GGGCAACAGA
TTAGCCAATG GCGAGCCCGA GGTGCAGGAG TTCTTGCACC TGGAATATGC CGACAAGGCC
ACGCTCTATG TGCCGGTCAG CCAGTTGCAG CTCATCAGCC GCTACACCGG CGTGGCCGCG
GACGAAGCGC CGCTGCACAA ACTGGGCTCC GGCCAGTGGG ACAAGGCCAA GCGCAAAGCG
GCCGAACAGG TGCGCGACTC GGCCGCCGAG CTGCTCAACA TCTATGCCCG GCGCGCCCTG
CGCGAAGGCC ATGCCTTCCG GTACTCGGCC GGCGACTACG AAATCTTTGC CAACGACTTC
GGCTTTGAAG AAACCGCCGA CCAGAGTGCT GCCATTCACG CCGTGATTCA GGACATGATC
AGCCCGCGCC CGATGGACCG GCTGATCTGC GGCGATGTCG GCTTTGGCAA GACCGAGGTC
GCCCTGCGCG CCGCCTTCAT TGCCATCACC GGCGGCAAGC AGGTGGCTTT TCTGGCACCG
ACCACGCTGC TGGCCGAACA GCACTACCAG ACGCTGGTCG ACCGCTTCAG CAAATGGCCG
GTCAAAGTGG CCGAGATGAG CCGCTTCCGC TCGGCCAAGG AAATCACCGC CGCCATGAAA
GGCATTGCCG ACGGCACCAT CGACATCGTG GTCGGCACCC ACAAGCTGCT GAGCAAAGAC
ACCCATTTCA AAGACCTGGG CCTGCTCATC ATCGACGAGG AGCACCGTTT TGGCGTGCGC
CACAAAGAGC AGATGAAAGC GCTGCGCGCC GAGGTCGATG TGCTCACGCT CACGGCCACC
CCGATCCCGC GTACGCTGGG CATGGCGCTG GAAGGTCTGC GCGACCTGAG CGTGATTGCC
ACCGCGCCGC AACGCCGCCT GGCCATCAAA ACCTTTGTGC GCACGGAAGG CGCAGGCGTG
ATCCGTGAGG CCGTACTGCG CGAACTCAAG CGCGGCGGCC AGGTTTACTT CTTGCACAAC
GAGGTCGAAA CGATCGAAAA CCGCCGCGCC AAGCTGGAGG AACTGCTGCC CGAAGCGCGC
ATTGCCGTGG CGCACGGTCA GATGCCGGAG CGCCAGCTGG AGGCCGTGAT GCGCGACTTT
GTGGCCCAGC GCTTCAACCT GCTGCTGTGT TCCACCATCA TCGAAACCGG CATTGACGTG
CCGACTGCCA ACACCATCGT GATGGCGCGC GCCGACAAAT TTGGCCTGGC GCAGTTGCAC
CAGTTGCGCG GCCGCGTCGG TCGCAGCCAC CACCAGGCCT ACGCCTACCT GATGGTGCCC
GACCTGGAGG GCCTGACCAA GCAGGCGCAA CAACGGCTGG ACGCCATCCA GCAAATGGAA
GAACTGGGCA GCGGCTTCTA CCTGGCCATG CACGACCTGG AGATTCGCGG TGCCGGCGAG
GTGCTGGGGG AAAACCAGAG CGGCAACATG CTGGAAGTCG GCTTTCAGCT CTACAACGAG
ATGTTGAGTG AAGCGGTGCG CTGCCTCAAG GCCGGTATTG AGCCCGATTT GCTCAGCCCG
CTCAACGTCA GCACCGACAT CAATCTGCAC GCCCCGGCGC TCTTGCCGAA TGATTTTTGT
GGCGACGTGC ACCTGCGCCT CTCGTTCTAC AAAAAGCTGG CCACCGCGAA CAATACCAAC
CAGATTGATG CGCTGCTGGA AGAACTGGTG GACCGCTTCG GCAAACTCCC AAACCAGGCG
CAGACCCTGA TCGACGTCCA CCGCTTGCGC GTTCTGGCCA AACCGTTTGG TGTGGTCAAG
GTCGATGCCG CCCCCGGCGT GATCACCATC ACCTTCAAGA AAAACCCGCC GATTGATCCG
ATGAAGATCA TTGCGATGAT CCAGAAGAAC AAGCACATCA AACTGGCGGG TAATGAGAAG
CTGCGCATCG AGCGGGAACT GCCTGAAGCC AAAGACCGGG CGCAGATGGT GCGCGATGTG
CTGCGTAATT TGGGGCAGCC GGTGGCGCCT GTTGCGACAA TCGCATAG
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| Protein sequence | MSRIGALATT CPAFMELPKL IPGKRFTLPR PVGSADALLL AQLGLREKSQ HKVTAIITAD
ALDAQRLIDE MAFFAPELRC VLFPDWETLP YDTFSPHQDL ISERLATLWR ISQRNKETGA
DVVLVPATTA LYRLAPPSFL AGYTFHFKVK QKLDEAKLKA QLTLAGYSHV TQVVSPGEYA
VRGGLIDLFP MGSAVPYRVD LFDDEIDSIR TFDPDSQRSL YPVPEVRLLP GREFPMDDEA
RARFRNRWRE LLEGDPTRSR IYKDIGNGVA TAGIEYYLPL FFDDTATVFD YLGEAATVVL
HGDLEPAFAH FWQDTRERYR LVQGDPERPV LPPGALFLST EQFYERVNQH AQLALRPALD
TASAYAEFEA LPPLSVVRGA EDPLARLKAH IRNTQQRTLV LAESEGRRAS LLDFLHSSQF
DPPAFDSLAE FERSDEPIGI ATSSLSAGFG WLEAGIDFVT ETELFAAGPT TRRRKKQEQV
SDVEALIKDL SELNIGDPVV HSAHGIGRYR GLINLDLGNR LANGEPEVQE FLHLEYADKA
TLYVPVSQLQ LISRYTGVAA DEAPLHKLGS GQWDKAKRKA AEQVRDSAAE LLNIYARRAL
REGHAFRYSA GDYEIFANDF GFEETADQSA AIHAVIQDMI SPRPMDRLIC GDVGFGKTEV
ALRAAFIAIT GGKQVAFLAP TTLLAEQHYQ TLVDRFSKWP VKVAEMSRFR SAKEITAAMK
GIADGTIDIV VGTHKLLSKD THFKDLGLLI IDEEHRFGVR HKEQMKALRA EVDVLTLTAT
PIPRTLGMAL EGLRDLSVIA TAPQRRLAIK TFVRTEGAGV IREAVLRELK RGGQVYFLHN
EVETIENRRA KLEELLPEAR IAVAHGQMPE RQLEAVMRDF VAQRFNLLLC STIIETGIDV
PTANTIVMAR ADKFGLAQLH QLRGRVGRSH HQAYAYLMVP DLEGLTKQAQ QRLDAIQQME
ELGSGFYLAM HDLEIRGAGE VLGENQSGNM LEVGFQLYNE MLSEAVRCLK AGIEPDLLSP
LNVSTDINLH APALLPNDFC GDVHLRLSFY KKLATANNTN QIDALLEELV DRFGKLPNQA
QTLIDVHRLR VLAKPFGVVK VDAAPGVITI TFKKNPPIDP MKIIAMIQKN KHIKLAGNEK
LRIERELPEA KDRAQMVRDV LRNLGQPVAP VATIA
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