Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1234 |
Symbol | |
ID | 3961224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 1329261 |
End bp | 1330427 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637916048 |
Product | lipopolysaccharide biosynthesis |
Protein accession | YP_522499 |
Protein GI | 89900028 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3524] Capsule polysaccharide export protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.288153 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCCAA ACATCGAAAC CGTCGAAGAA GATGACGAAA TCAGCTTGCT AGACCTGCTG CAAGTCGTCG CCGACAACCT GCGCCTGCTG GTGCTGGCGC CCCTGACCGC CGGCCTGCTG GCGCTGGGCA TCAGCTTTGC CATCGCCCCC ACCTTTACCG CCACCACCAA ATTCATGCCG CCGCAGCAAC AGCAAAGCGC GGCGGCTTCC ATGTTGTCAA GCCTGGGCGC CCTGGGCGGT CTGGCCGGCG CAGCCACCGG TCTCAAGAAC CCGGCTGACC AATACGTCGC CTTCCTCAAA AGCCGCAGTG TGCAAGACGT GCTGATCGAC CGCTTCAAGC TCATGGAGCG CTACGAATCC AAGCTCAAAA CCGATGCCCG CACGACATTG GAGGGTGTCA GCAAGATCGC CAGCGGCAAA GACGGCCTCA TCACCATTGA CGTGGACGAC AAAGACCCCG CTTTCGCTGC CCAACTGGCC AATGCCTATG TCGAAGAACT GGGCCGCCTC CTTGACCGCC TGGCCGTCAC CGAAGCCCAG CAACGCCGCG TCTTCTTTGA AAAGCAGCTT ACCAACGCCA AAGACAACCT GATCAAGGCC GAGCAGGCCC TGGGCGCCAG CGGTGTCAAC AGCTCGGTCC TCAAGTCCAC CGGCGCCGCC GTGGAGGCCG TTGCCCGCTT GCGGGCGCAA ATCACCGGGC AAGAAGTCAA GCTCGCCTCC ATGCGCGGCT ACCTGACTGA ATCCGCGCCG GACTTCAAAC AGGCCCAAAC CGAGCTGTCC GCCTTGCGCG GTCAACTGGC TCGCGCGGAG CAATCAGAGC CCGCCACCGA CAGCGCAAGC AGCGACTACA TCGCCAAATT CCGCGACTTC AAATACTATG AAACCCTGTT TGAGCTCTTT GCCAAACAGT ATGAAATGGC CCGCATCGAC GAAAGCCGTG AAGGCGCTGT GATTCAAGTG CTGGACGCCG CCCAGCCGCC CGAGCGCAAA AGCAAACCCA AAAAAGCGTT GATCGCCCTG ATGACCACCC TGGCCGTCGG CTTTGCATTG CTGCTGTTCG TTTTCATCCG CCAAGCCCTG CGCGGTGCCG CCCAAACGCC TGAGTCGGCC GAGAAAATTG GCCGCCTGCG CCGCTCCTGG GCCAAGGCCC TGGGCAAAGC CAGCTAA
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Protein sequence | MTPNIETVEE DDEISLLDLL QVVADNLRLL VLAPLTAGLL ALGISFAIAP TFTATTKFMP PQQQQSAAAS MLSSLGALGG LAGAATGLKN PADQYVAFLK SRSVQDVLID RFKLMERYES KLKTDARTTL EGVSKIASGK DGLITIDVDD KDPAFAAQLA NAYVEELGRL LDRLAVTEAQ QRRVFFEKQL TNAKDNLIKA EQALGASGVN SSVLKSTGAA VEAVARLRAQ ITGQEVKLAS MRGYLTESAP DFKQAQTELS ALRGQLARAE QSEPATDSAS SDYIAKFRDF KYYETLFELF AKQYEMARID ESREGAVIQV LDAAQPPERK SKPKKALIAL MTTLAVGFAL LLFVFIRQAL RGAAQTPESA EKIGRLRRSW AKALGKAS
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