Gene Rfer_1234 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1234 
Symbol 
ID3961224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1329261 
End bp1330427 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content62% 
IMG OID637916048 
Productlipopolysaccharide biosynthesis 
Protein accessionYP_522499 
Protein GI89900028 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3524] Capsule polysaccharide export protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.288153 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCCAA ACATCGAAAC CGTCGAAGAA GATGACGAAA TCAGCTTGCT AGACCTGCTG 
CAAGTCGTCG CCGACAACCT GCGCCTGCTG GTGCTGGCGC CCCTGACCGC CGGCCTGCTG
GCGCTGGGCA TCAGCTTTGC CATCGCCCCC ACCTTTACCG CCACCACCAA ATTCATGCCG
CCGCAGCAAC AGCAAAGCGC GGCGGCTTCC ATGTTGTCAA GCCTGGGCGC CCTGGGCGGT
CTGGCCGGCG CAGCCACCGG TCTCAAGAAC CCGGCTGACC AATACGTCGC CTTCCTCAAA
AGCCGCAGTG TGCAAGACGT GCTGATCGAC CGCTTCAAGC TCATGGAGCG CTACGAATCC
AAGCTCAAAA CCGATGCCCG CACGACATTG GAGGGTGTCA GCAAGATCGC CAGCGGCAAA
GACGGCCTCA TCACCATTGA CGTGGACGAC AAAGACCCCG CTTTCGCTGC CCAACTGGCC
AATGCCTATG TCGAAGAACT GGGCCGCCTC CTTGACCGCC TGGCCGTCAC CGAAGCCCAG
CAACGCCGCG TCTTCTTTGA AAAGCAGCTT ACCAACGCCA AAGACAACCT GATCAAGGCC
GAGCAGGCCC TGGGCGCCAG CGGTGTCAAC AGCTCGGTCC TCAAGTCCAC CGGCGCCGCC
GTGGAGGCCG TTGCCCGCTT GCGGGCGCAA ATCACCGGGC AAGAAGTCAA GCTCGCCTCC
ATGCGCGGCT ACCTGACTGA ATCCGCGCCG GACTTCAAAC AGGCCCAAAC CGAGCTGTCC
GCCTTGCGCG GTCAACTGGC TCGCGCGGAG CAATCAGAGC CCGCCACCGA CAGCGCAAGC
AGCGACTACA TCGCCAAATT CCGCGACTTC AAATACTATG AAACCCTGTT TGAGCTCTTT
GCCAAACAGT ATGAAATGGC CCGCATCGAC GAAAGCCGTG AAGGCGCTGT GATTCAAGTG
CTGGACGCCG CCCAGCCGCC CGAGCGCAAA AGCAAACCCA AAAAAGCGTT GATCGCCCTG
ATGACCACCC TGGCCGTCGG CTTTGCATTG CTGCTGTTCG TTTTCATCCG CCAAGCCCTG
CGCGGTGCCG CCCAAACGCC TGAGTCGGCC GAGAAAATTG GCCGCCTGCG CCGCTCCTGG
GCCAAGGCCC TGGGCAAAGC CAGCTAA
 
Protein sequence
MTPNIETVEE DDEISLLDLL QVVADNLRLL VLAPLTAGLL ALGISFAIAP TFTATTKFMP 
PQQQQSAAAS MLSSLGALGG LAGAATGLKN PADQYVAFLK SRSVQDVLID RFKLMERYES
KLKTDARTTL EGVSKIASGK DGLITIDVDD KDPAFAAQLA NAYVEELGRL LDRLAVTEAQ
QRRVFFEKQL TNAKDNLIKA EQALGASGVN SSVLKSTGAA VEAVARLRAQ ITGQEVKLAS
MRGYLTESAP DFKQAQTELS ALRGQLARAE QSEPATDSAS SDYIAKFRDF KYYETLFELF
AKQYEMARID ESREGAVIQV LDAAQPPERK SKPKKALIAL MTTLAVGFAL LLFVFIRQAL
RGAAQTPESA EKIGRLRRSW AKALGKAS