| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1099 |
|---|
| Symbol | |
|---|
| ID | 3963483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1177505 |
|---|
| End bp | 1178767 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637915920 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_522371 |
|---|
| Protein GI | 89899900 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000491601 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTTA ATGCTGCCCG TACCGCAGGC AAAATTCTTT CCCTGACGGT GCTGCTCGTC
AGCACCAGCC TGGCCCAAGC CCAGAGCCAG ATACTGTCCG TGACGGCTTA CCCGGCGGTG
GACGAGATCA TCAAGGCCGC GATGCCACAG TGGAAGAAGA CGCATCCCAA CGTCGAGATC
AAACTGGTCA GCCGTGCATT TGAGGATCAT CACACCGCCA TGACCACGGC CCTGTCCACC
TCAAGCAATC TGCCGGACGT GATGGCGCTG GAATTTGCCT ACGTGGGCCG CTTTGGCGCG
GGAGGTGGAC TGGAAGATCT GTCTCAGTCG CCTTACCGAA TCAAGGACAC GCAAATGCGT
TTTGTGCCCT TTGCTTTCAG GCAGGCCACC CTCAGTACTG GCGCGGTGGT GGCCGCGCCC
ACTGACATCG GCCCGGGCAC CTTGCTGTAC CGGACCGATC TGCTTAAAAA AGCCGGTGTC
AGCGAAGCGG AGCTGACGCA GTCCTGGGAC TCCTTTGTGG CGTCGGGCGT GAAGATCAAG
GCCACCACGG GCGCCTACCT AATGGCGCAC GCGCGCGATA TCAAGGACAT CCTGATCCGC
TCCAACGTCA AGCCGGGCGA TGGCCTGTAC TTTGATGCCG CCGGCAAGGT GGTGGTGGAT
TCGTCGCGCT TTGTGCGCGC GTTCGAACTG GCGCGCAGGG TGCGCCAGCA ACAGCTCGAC
GGCAAGATCA GCGGCTGGTC GACCGCATGG TCTCAGGGCT TCAAGAACGG CAACATCGCC
ACGCAGATGT CGGGTGCCTG GCTGGCCGGG CAAATGGCAA GCTGGATTGC ACCCACCACA
AAGGGTCTCT GGCGTGCCTC GCAGCTGCCC GAAAAAGCCT GGGGCGCTTG GGGCGGCACT
TTTTATGCGA TCCCGAAGGC GGCGAAGAAC AAGGCGCTGG CCTGGGAGTT CATCCAGTTC
ATGACGCTCA ACCGCGACGC ACAACTCAGC GCGTTCAAGG TGCAGGACGC TTTTCCGGCC
TTGCTCGAAG CGCACACTGA TCCGTTTTAC GACCAGCCGA TTGAATTCCT GGGCGGGCAG
AAAGCGCGTC TGCTGTGGCG CGAAGCGGCA CTGAAAATCA ACGCCATCGA CGTGAACAAG
CTGGACCCGA TTGCCGACGA AATCGTCAAC ACCGAGCTCG ACAAGGTGCT GGACCAGGGC
AAGGACATTC CCAAGGCGCT GGCTGATGCC AAGGCCTTGC TGGAGCGGCG TGCGCGCCGC
TAA
|
|---|
| Protein sequence | MLFNAARTAG KILSLTVLLV STSLAQAQSQ ILSVTAYPAV DEIIKAAMPQ WKKTHPNVEI
KLVSRAFEDH HTAMTTALST SSNLPDVMAL EFAYVGRFGA GGGLEDLSQS PYRIKDTQMR
FVPFAFRQAT LSTGAVVAAP TDIGPGTLLY RTDLLKKAGV SEAELTQSWD SFVASGVKIK
ATTGAYLMAH ARDIKDILIR SNVKPGDGLY FDAAGKVVVD SSRFVRAFEL ARRVRQQQLD
GKISGWSTAW SQGFKNGNIA TQMSGAWLAG QMASWIAPTT KGLWRASQLP EKAWGAWGGT
FYAIPKAAKN KALAWEFIQF MTLNRDAQLS AFKVQDAFPA LLEAHTDPFY DQPIEFLGGQ
KARLLWREAA LKINAIDVNK LDPIADEIVN TELDKVLDQG KDIPKALADA KALLERRARR
|
|---|
| |