| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1093 |
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| Symbol | |
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| ID | 3963477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1169265 |
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| End bp | 1171460 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637915914 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_522365 |
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| Protein GI | 89899894 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCTGCCA AGTTTGTGAA TGAAGACCTG AACCCCCAAC AGACCGAAAC CGACACCGCG
TTGCGACAGC TCAATGCCCA GTTGACGGAG AAATCCCGAC TGCTGCAAAC CACGCTCACC
AGCATCAGCC AGGGCATCCT GGTATTTGAT GTGCAAGGGC GGGTGGATAT TTTCAACCCC
AGAGTTTGCG AGTTGCTGGA CCTGCCGGAG CGTCTGCTGG CCAGCCGACC GACGGTGCAG
GCGCTGACCC GTTACCAACG TGACAGGGGC GATTTTGGTC GGGACGCCGC GCTGGTCGAG
GTCCATGCGC GCAACTGCGT GTTGGGCGTG GCTGCTGGCG CCCCTGACGA CCTGCCCTCC
CACTATCTGC GTGTGACACC GGCGGGTCGC ACCCTGGAAG CCAGGACGCA GGCGCTGCCT
GAGGGCTGCA TGGTGCGCAC TTTTACCGAC GTCACGGACT ATGTGCAGGC GCAGGCCACG
CTACAAAAAA ATGAGGAACG CTGGAAGCTG GCCCTGGAGA GCACTGGCGA TGGCGTCTGG
GACTGGCATA TCCAGAGCGG TGTGGAGTTC TATTCCAAGC GATTGCTGGA AATACTCGGC
TACGACGTCG GTGATGTCCA CCTTCAGGCG CGGGGGGAGT TCGACAAGCT CATTCATCCC
GACGACATGG CGCAGCTCCT GCGCGCGCGT CAGGCCCATT TTGACGGCCT GACCTCCACC
TATGCCGATG AACACCGCGT GCGCTGCAAG GACGGCAGCT GGAAGTGGAT GCTGTCGCGT
GGCATGGTCA TCAGCCGCGA CGCGCAGGGC TTGCCGCTGC GCATGATTGG GACCCACACC
GACGTCACCG AGCGCAAGAA ATCAGAAGCG CTGATCTGGC GACAAGCGCA CTTCGACACC
TTGACCGGTC TGCCGAATCG CCACATGCTG CGCGACCGGG TTGCGCAGGA GATCAAGAAA
AGCAAACGTG ACGGTCTGCA ACTCGCTGTC CTGTTCATTG ACCTGGACCA CTTCAAGGAA
GTCAACGACA CGCTCGGTCA CAACAGTGGT GACCGGCTGC TGGTAGAAGC GGCGCGGCGC
ATCAGCGACT GCGTGCGCGA GTCCGATACC GTGGCCCGCA TGGGCGGCGA CGAGTTTGCC
GTCATCCTGA CGGAGCTGCT TGATGCCAGC AGCCTGGAGC GCATCCTGCA AAAGATTCTG
CGGGCGCTGG AATGCGTATT CCAGTTGGAC GGAGAACAGG CCTTTGTGTC GGCCAGCATT
GGCGTCACGA TGTATCCCCT TGATGCCGGC GACATTGAAG ACCTGTTCAA GAACGCCGAC
CAGGCGCTGT ATGTGGCCAA GGGCGCCGGG CGCAATCGCT TCAGTTTTTT CACCCCGGCC
CTGCAACAGG CCGCACAAAA CCGGGTGCGG CTGGCCAACG ACCTGCACGC CGGGCTCATC
GGGCAACAGT TCCGGCTGGT TTACCAGCCC ATTGTTGAAC TCGCCAGCGG CGCCGTTTGC
AAGGCGGAAG CATTGATTCG CTGGCAACAC CCGACGCGCG GACTGATCAG CCCGGTCGAG
TTCATTCCGA TTGCCGAAGC CAGCGGTTTG ATCGTCGCTA TTGGCGAGTG GGTGTTTCAG
CAGGCGGCGC GCCAGGTGCA GGCCTGGCGC ACGGCGCTGG ACCCTGATTT CCAGATCAGC
GTCAACAAGT CGCCGGTGCA GTTTTACCAA CGCGGCAAGA CCAAGACGCC GTGGGCCCAG
CAGTTGCAGG CGATGGGTTT GCCGGGCAAC AGCATCGTGG TGGAGATCAC CGAAGGGCTG
TTGCTCGACA CCAGCTCCAG CGTGGCCGAC CAGCTGCTGG ATCTGCACGA CGCTGGCATT
CAGGTGTCGC TGGACGACTT TGGCACCGGC TATTCGTCCT TGTCCTATCT GCAGCGTTTT
GACATCGACT TTGTCAAGAT CGACCAGTCG TTTGTGCGCT ACCTGATTCC CGAATCGACT
GACTTGGCCC TGTGCCAGGC CATCATCGCC ATGGCTCACG CCCTGGGCAT GAAGGTGATC
GCCGAGGGTG TTGAAACCGC GCAGCAACGC GATTTGCTGG CCGCGGCAGG CTGCGATTAC
GGTCAAGGCT ACTTGTTCTC GAAACCTGTT TCGGCGCCGG ACTTTGAAGC GTTCATGGCT
GCCCAGGCAA GCCGGACGCC TGAATTGACA GCCTAA
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| Protein sequence | MSAKFVNEDL NPQQTETDTA LRQLNAQLTE KSRLLQTTLT SISQGILVFD VQGRVDIFNP
RVCELLDLPE RLLASRPTVQ ALTRYQRDRG DFGRDAALVE VHARNCVLGV AAGAPDDLPS
HYLRVTPAGR TLEARTQALP EGCMVRTFTD VTDYVQAQAT LQKNEERWKL ALESTGDGVW
DWHIQSGVEF YSKRLLEILG YDVGDVHLQA RGEFDKLIHP DDMAQLLRAR QAHFDGLTST
YADEHRVRCK DGSWKWMLSR GMVISRDAQG LPLRMIGTHT DVTERKKSEA LIWRQAHFDT
LTGLPNRHML RDRVAQEIKK SKRDGLQLAV LFIDLDHFKE VNDTLGHNSG DRLLVEAARR
ISDCVRESDT VARMGGDEFA VILTELLDAS SLERILQKIL RALECVFQLD GEQAFVSASI
GVTMYPLDAG DIEDLFKNAD QALYVAKGAG RNRFSFFTPA LQQAAQNRVR LANDLHAGLI
GQQFRLVYQP IVELASGAVC KAEALIRWQH PTRGLISPVE FIPIAEASGL IVAIGEWVFQ
QAARQVQAWR TALDPDFQIS VNKSPVQFYQ RGKTKTPWAQ QLQAMGLPGN SIVVEITEGL
LLDTSSSVAD QLLDLHDAGI QVSLDDFGTG YSSLSYLQRF DIDFVKIDQS FVRYLIPEST
DLALCQAIIA MAHALGMKVI AEGVETAQQR DLLAAAGCDY GQGYLFSKPV SAPDFEAFMA
AQASRTPELT A
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