| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1088 |
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| Symbol | |
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| ID | 3963472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1162563 |
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| End bp | 1164524 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637915909 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_522360 |
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| Protein GI | 89899889 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCCTGT CGGCAAATCC GGCGGCGCAG GCGCAATCCA GGGTGGCAGG CACCACGGCC
GCCGACCAGA CTATTCTGGA GATGAACCAG GCCTTCAAAA AGGGCAATAG CAAGCGTCTG
AGCGAGCTGT TGCCCCAGAT GCGTGACCAC ACCCTGGAGC CCTGGGCCGC TTATTGGGAA
TTGCGTGCCC GCCTGGACAC CGCAAGCCCG GCTGAAATTC AGTATTTTTT GAACCGCTTT
GCCGGTACCT ACCAGGAGGA CCGCTTGCGC AACGACTGGC TGCTGCTGCT CGGGCAACGG
CAGGAATGGG GCACTTTCAT GGCCGAGTAC CCCAATTTCC GCATGAACGA TGACCGTTCG
GTCCAGTGCT ACGCCTTGCT GACCGACTTC AAGTCAAGCG AACGCGATGT GGTGCAACAA
GTGGAGGACC TGTGGCTGGC CCAGCGCGAT GCCGATGACG GCTGTGCGGC CGCCGCAGAC
CAGCAGCTCA AAGCCAGAAA GCTCCAGCCC CAGACAGTCT GGTTGCGCGC GCGCCAGGGG
TTCGAAAACG ACAACCTGCG CATCGCCACC CAGGCGGTTG GCCTGCTCAA TGCCGAATGG
GCCAACACGG TCAGCGCGAT CTACACCCGG CCCGAACACT ACCTGGAAGG CAAGCTGCTG
GCGCTGCGGC TGCGCACCAA AGAGCTGGTC ACGCTGGCCA TGATTCGCCT CGCTGTCAAA
GACCCTGCCG CTGCTGCCGT CGAGATTGAC AAACTGCGCT GGAAAACCCA ACTCAGTCAG
GAGGAGCGCA GTTGGGTCTG GGGCGTGATC GGCAAGCGTG CCGCCATGCG CTTGTCGGAT
GACGCCTTGG CCTATTTCAT GAAAGGGCAA GACAAGTTCA TGCAGGCCGA TCAACTGGCC
TGGAAGGTGC GCGCGGCGCT GCGGGCAGGC AACTGGGCGC AGGTGGTGGC TGCCACGTCG
GCCATGAGCG AGAGCCAGCG CCAGGACGCC GCCTGGGTCT ACTGGCGCGC GCGCGCCCTG
CTGAAGCTGG CCAAGACGCA GGCGGATCAT GTCGAGCCGC AGCGCTTGTT GCAAAGCATT
GCTGGCGTGC GCGGCTTCTA CGAGCAACTG GCACTGGAAG AACTTGGCCA GCGCGTGACC
GTGCCCGCAG CGCCCGCCGC GTTGACAGCC GAAGAAAAGG ACGCGGCCCG GCTCGACCCC
GGCCTTGGTC GCAGTCTGTA TGCCATTCAA ATCGGCTTGC GCAGCGAGGG CGTGCGTGAA
TGGAATTACA GCGTCAATAT GCACCAACGC GGCGGCATGA ACGATCGCGA ACTGCTGGCC
GCTGCCGACC TGGCCTGCCA GCATGAGGTG TGGGACCGCT GCATCAACAC CAGTGAGCGG
ACTAAAAGTG TGATCGATTT CGCGCAGCGC TTTCCTATGC CACACAAGGA CGCGGTGCTG
CAGCGCAGCT CGGAAATCGG GTTGGACGCG GCCTACGTGT ATGGCTTGAT CCGGCAGGAA
AGCCGCTTCA TCGTGGACGC CCGTTCGGGT GTCGGTGCCG CCGGGCTGAT GCAAGTGATG
CCAGCGACGG CCCGCTGGAC CGCCAAAAAA ATCGGGCTGG TCAACTTCAA GCCGCAACAG
CTCAGTGAGC GTGACACCAA CATTGCCATT GGCACCGGCT ACCTCAAGTT GGTGCTGGAC
AACTTTGACG GCTCCATGCC CATGGCCGCC GCCGCCTACA ACGCCGGGCC CGGGCGCCCG
CGCAGCTGGC GCGGTCAAGC TGGGGCGCCG ACGCTGGAAG CCGCCATCTG GGCCGAGAAC
GTGCCGTTCA CCGAGACCCG TGACTATGTG AAAAAAGTCT TGTCCAACAC CACCAGCTAC
GCCGCGCTCA TTTCCGGTCA ACCGCAGTCG CTGAAAAGCC GCCTCGGGCT GATCGGGCCA
CGCGGTGCCG GGGCGGCACC GGTCGATTCC GACTTGCCTT GA
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| Protein sequence | MTLSANPAAQ AQSRVAGTTA ADQTILEMNQ AFKKGNSKRL SELLPQMRDH TLEPWAAYWE
LRARLDTASP AEIQYFLNRF AGTYQEDRLR NDWLLLLGQR QEWGTFMAEY PNFRMNDDRS
VQCYALLTDF KSSERDVVQQ VEDLWLAQRD ADDGCAAAAD QQLKARKLQP QTVWLRARQG
FENDNLRIAT QAVGLLNAEW ANTVSAIYTR PEHYLEGKLL ALRLRTKELV TLAMIRLAVK
DPAAAAVEID KLRWKTQLSQ EERSWVWGVI GKRAAMRLSD DALAYFMKGQ DKFMQADQLA
WKVRAALRAG NWAQVVAATS AMSESQRQDA AWVYWRARAL LKLAKTQADH VEPQRLLQSI
AGVRGFYEQL ALEELGQRVT VPAAPAALTA EEKDAARLDP GLGRSLYAIQ IGLRSEGVRE
WNYSVNMHQR GGMNDRELLA AADLACQHEV WDRCINTSER TKSVIDFAQR FPMPHKDAVL
QRSSEIGLDA AYVYGLIRQE SRFIVDARSG VGAAGLMQVM PATARWTAKK IGLVNFKPQQ
LSERDTNIAI GTGYLKLVLD NFDGSMPMAA AAYNAGPGRP RSWRGQAGAP TLEAAIWAEN
VPFTETRDYV KKVLSNTTSY AALISGQPQS LKSRLGLIGP RGAGAAPVDS DLP
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