| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1077 |
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| Symbol | |
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| ID | 3963500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1151700 |
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| End bp | 1152893 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637915898 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_522349 |
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| Protein GI | 89899878 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000554995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCA AGACCCTCGT TGCCGCCATG GCTATTGGCT TTGCCGCCGC AGCATCGGCA
CAGACCACCG GCCCGGTCAA GATCGGTTTC ATCACCGACA TGTCCAGCGT GTATGCCGAC
ATCGATGGCC CGGCCGGCGG TGAAATGGTC AAGTGGGCAG CGCAGGATTT TGGCGGCAAG
GTGCTGAACC GTCCGATTGA AGTACTGACC GCCGACCACC AGAACAAGGC CGATGTCGCC
AGCTCCAAAG CGCGCGAATG GATCGACAAG GATGGCCTGT CGATGCTGAT TGGCGGCACG
AACTCCGGCA CGTCGCTGGC CATGGCCAAA GTCGCTGAGG AAAAAAAGCG CCCCTTCATC
TCGATCGGCG CCGGCTCGGC CCGCCTGACC AATGAAGCCT GTTCGCCCTA TACCGTTCAT
TACGCCTACG ACACGGTGGC GCTGGCCAAG GTGGCCGGCA CGGCACTGGT CAAGGCCGGT
GCCAAGACCT GGTTCTTTCT GACAGCCGAC TATGCGTTCG GTTATTCGTT GGAAGGCGAT
GCCTCCAACG TGGTCAAGGC CAATGGCGGC ACCGTTGTCG GTGCGGTTCG TCACCCGCTC
AATGCTTCCG ATTTCTCATC GTTCCTGCTG CAGGCGCAAT CGTCCAAAGC GCAGATCCTG
GGGCTGGCCA ATGCTGGCGG CGACTTTACC AACGCGATGA AGGCGGCCAA GGAATTCGGC
ATCAACAAGA CCATGAAGAT CGCCGGCCTG CTGGTGTTCA TCAACGACGT GCACAGCCTG
GGACTGGCCA ACACCGAAGG CCTGCAACTG GCTGACAGCT GGTACTGGAA CCAGGATGAC
GCCTCGCGCA AATTTGCCAA ACGTTTCTTC GACAAATACA AGCGCATGCC TTCCAGCGTA
CAAGCCGCCG ACTACTCGGC CGCCGCCAAT TACCTGAAGG CAGTGCAGAC CGCCGGCACG
ACCGACGCGG ACAAGGTGAT GTCCACCTTG AAGGGCATGA AGATCGATGA CTTCTACAAC
AAGGGTCAGA TCCGCGCTGA CGGCCGCATG ATCCACGACA TGTACCTGTT CCAGGTCAAG
TCGCCCAAGG AATCGACCGT GCCATGGGAC TACTACAAGA CCGTGGCCAA GATTCCGGGT
GAGCAGGCTT TCACCACGGT GGCCGAATCC AAATGTGCGC TGAACAAGAA ATAA
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| Protein sequence | MKLKTLVAAM AIGFAAAASA QTTGPVKIGF ITDMSSVYAD IDGPAGGEMV KWAAQDFGGK
VLNRPIEVLT ADHQNKADVA SSKAREWIDK DGLSMLIGGT NSGTSLAMAK VAEEKKRPFI
SIGAGSARLT NEACSPYTVH YAYDTVALAK VAGTALVKAG AKTWFFLTAD YAFGYSLEGD
ASNVVKANGG TVVGAVRHPL NASDFSSFLL QAQSSKAQIL GLANAGGDFT NAMKAAKEFG
INKTMKIAGL LVFINDVHSL GLANTEGLQL ADSWYWNQDD ASRKFAKRFF DKYKRMPSSV
QAADYSAAAN YLKAVQTAGT TDADKVMSTL KGMKIDDFYN KGQIRADGRM IHDMYLFQVK
SPKESTVPWD YYKTVAKIPG EQAFTTVAES KCALNKK
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