| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1034 |
|---|
| Symbol | |
|---|
| ID | 3963633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1093936 |
|---|
| End bp | 1095138 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637915856 |
|---|
| Product | Beta-ketoadipyl CoA thiolase |
|---|
| Protein accession | YP_522307 |
|---|
| Protein GI | 89899836 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02430] beta-ketoadipyl CoA thiolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0157191 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGG CTTTCATCTG CGACGCCATC CGCACCCCTT TCGGCCGCTA CGGCGGCGCG
CTCTCCAGCG TACGCACCGA CGATCTTGGC GCGATTCCCT TGCGGGCGCT GATGGCGCGC
AACCACAACG TGGACTGGGC CGCCGTCACC GATGTGCTCT ACGGATGCGC CAATCAAGCC
GGCGAAGATA ACCGCAATAT CGCCCACATG GCTTCCCTGC TGGCGGGTTT GCCCTTTGAA
GTGCCGGGTG CCACCATCAA TCGTCTATGC GGCTCGGGCC TCGATGCGGT AGGCACGGCA
GCGCGTGCCA TCAAAGCGGG AGAAGCAACG CTGATGATTG CGGGCGGCGT CGAAAGCATG
AGCCGCGCGC CTTTTGTCAT GCCCAAGATG GATGCGGCAT TTGGCCGCGC CAATGCTGTC
TATGACACCA CGATCGGCTG GCGCTTCATC AACAAGTTGA TGAAAGCGCA GTACGGAGTG
GACTCAATGC CAGAAACTGC CGAGAACGTG GCGACAGAGT TCAAGATCGA GCGCGAGGCA
CAGGACAGGA TGGCCTTGGC TAGCCAGATG AAAGCGGTAG CTGCGCAAAA GGCCGGTCAC
CTGACACACG AAATCACACC AGTGACGATT ATGCAGAAGA AGGGTGACGC CCTCATCGTG
GACCAAGATG AGCACCCGCG TGAAACCAGC CTCGAAACGC TGGGAAAACT CAAGCCCATC
GTGCGCCCGG ATGGCACAGT CACGGCCGGC AATTCCAGCG GAGTCAACGA CGGGGCCTGC
GCGCTGCTGC TGGCTGACGA AGCTACTGCT ACCAAGAACG GCCTAGTCCC AAAAGCCCGC
GTGGTCGGCA TGGCCAGCGC CGGTGTGGCG CCACGCATCA TGGGCATAGG CCCGGCGCCG
GCCACGCAAA AAGTATTGAC CCTGACTGGC CTGACGCTCG AACAGTTGGA CGTCATCGAG
CTCAACGAAG CATTTGCCGC ACAAGGTTTG GCTGTGCTGC GTCTGCTGGG GCTGCAAGAC
GACGATCCGC GAGTCAACGC CTGGGGCGGT GCCATCGCGC TGGGGCACCC GTTGGGTGCC
TCGGGTGCTC GGCTCGCCAT CACGGCCATC AACCGCCTGC ATGCCACAGG TGGTCGCTAC
GCGCTATGCA CCATGTGCAT TGGCGTGGGG CAGGGTATCT CGATCATCCT GGAGAGGGTG
TAG
|
|---|
| Protein sequence | MNQAFICDAI RTPFGRYGGA LSSVRTDDLG AIPLRALMAR NHNVDWAAVT DVLYGCANQA
GEDNRNIAHM ASLLAGLPFE VPGATINRLC GSGLDAVGTA ARAIKAGEAT LMIAGGVESM
SRAPFVMPKM DAAFGRANAV YDTTIGWRFI NKLMKAQYGV DSMPETAENV ATEFKIEREA
QDRMALASQM KAVAAQKAGH LTHEITPVTI MQKKGDALIV DQDEHPRETS LETLGKLKPI
VRPDGTVTAG NSSGVNDGAC ALLLADEATA TKNGLVPKAR VVGMASAGVA PRIMGIGPAP
ATQKVLTLTG LTLEQLDVIE LNEAFAAQGL AVLRLLGLQD DDPRVNAWGG AIALGHPLGA
SGARLAITAI NRLHATGGRY ALCTMCIGVG QGISIILERV
|
|---|
| |