Gene Rfer_1021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1021 
Symbol 
ID3963736 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp1077390 
End bp1080545 
Gene Length3156 bp 
Protein Length1051 aa 
Translation table11 
GC content58% 
IMG OID637915844 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_522295 
Protein GI89899824 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.126981 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTTCC ACCTCCTTCA TCTGCGCTCG CTCAAAACCA GAGTAACGCT CTTTACGTTG 
ACCATTTTCA TGGTCAGCAT GTGGACGCTG GCCTTTAACA CCAACCGAAT GTTGCACGCG
GATATGGAGC GCGTGCTGGG CGAACGGCAA TTCGCCACGG TTTCCATGAA GGCCGAAGAG
GTCAATGAGG AACTGGAGCG CCGCATGCAG GCGCTGGAGA ATGTTGCCCA CCGAGTGAGC
CCGGCCCTGT TGGCCAATCC GGCGGCCTTA CAGGCACTCC TGGAAGAGCA TGTGATTCTG
CAGAGCCTGT TCAACGGTGG CACCTATGTC ACCCGCACGG ATGGCACCGC GATTGCCAGT
CTTCCGGTTT CAGCGAACCG AATCAGCATC AACTACCTTG ACCGGGATTA CCTGGCCGCA
GCCCTCAAGG AAGGGAGAAC GATAGTTGGT CGACCAGTCT TAGGCAAGTC CATAAATGCG
CCGATTCTCG GCATCGGGCT CCCGATTCGC GATACGAAGG GACTGGTAAT TGGCGCCCTG
GCCGGTGTGA TCAACCTGGG CCAGCCCAAT TTCCTGGACA AGATTGCAGC CAGCCACTAC
GGCAAGACCG GCGGCTACCT GCTGATTGCA CCGCAGCACA ATCTGTTTAT CACCGCCACC
GACAAGAGCC GCATCATGCA GCCGCTCCCG GCCCCGGGCC TCAATCCGAT GCAGGACCGG
TACATGCAAG GCTTCAACGG ATTTGGGACC GCCGTGAACT CGCATGGCAT AGAAATGTTA
TCAGCGGCGC AGCGGGTTCC GGTCGCTGGC TGGGTCGCTA TCGCCTTGCT GCCCACAGCA
GAGGCTTTTG CCCCGATCAA CGTCATGCAT CAGAGGATGC TGCTGACGAC CCTCTTTCTT
ACCCTGCTGG CAGGTGCTCT AACCTGGTGG GTGTTGCGGC GCGAACTGTT GCCGCTGTTC
AAGGCGGCAC GCAGCTTGGC CACCCAGGCA GAAACAGACC AGCTCCCGCA GCCCTTGCCA
CTCACCAGAC AGGACGAAAC CGATCAACTG ATCAGTGGCT TCAATCGGCT ACTGCAGACC
TTGACGAGAC GGGAAGAGTC CCTGAAGGAG AGCGAAGAGC AGCACCGACG GCTGATTGAT
AACAGCCACG ATGTGATCTA CACGCTAACT AAAGCGGGGG TATTTACCTT CATGTCGTCG
GCCTGGACCG CGCTGCTGGG GCATCCGCTC AACCAGGTCG TCGGGCAGAC AGTCTTTACT
TTTGTTCATC CGGAAGATGT TGCCGTGTGC ACGGCGTTTA TGCAAGGCGT AATGGCGACA
GGGCAATCGC TAGAGGGCAT CGAATTGCGT CTTCGCCACC TCGACGGAGG CTGGCGTTGG
TTCCACACCA ATGCAGTTCC GTTAAAGAAC GAAACCGGGA AAGTCATTGG TTTACAGGGA
AGCGCGATGG ACGTCACCGT GCGCAAACTG GCAGAGGAAG ATACCCGCAT CGCTGCTACC
GCCTTCGAGT CACAGCAAGG CATGATCATT ACCAATGCCG AGAAAGTGAT CCTGCGCGTC
AACAAGGCTT TCACCGAGAT TACCGGCTAC ACGATGGAAG AAGCTTTGGG CCAGACGCCA
AGACTGCTCA AATCAGATCG CCATGACGCA GGCTTTTATG GCGCCATGTG GGCGAGCGTC
GCGCGTAGCG GGTCATGGCA AGGCGAAATA TGGAGACAAC GCAAGAGTGG CGAGCAGTAT
CCAGAATGGC TCAGCATCAA CGCGGTGAAA GACGCTGCAG GGCTGGTCAC TCACTACGTT
GGCGTCTTCA GCGATATCAC TGAACGCAAA ATATCCGAAG AAAAAATCGA TCGACTGGCC
TTCTACGACG CCTTGACCGG CTTGCCCAAT CGCCGACTCA TGATCGATCG GCTGCAGCAG
GCCTTGGCCG CCACCGCCCG CCACCACTGC AAGGGCGCGC TGCTGCTCGT TGATCTGGAT
AACTTCAAAA CCCTCAATGA CACCCTGGGC CATGACCAGG GCGATCTGCT ACTGCAGCAC
GCCGCCAGGC GTCTGTCTGC ATGCCTGCGC GAGAGCGACA CCGTGGCCCG CGTAGGCGGT
GATGAATTCA TCGTGTTGAT GGAAGACATG AGCCAGAGTG ACCAAGAAGT TGCCACCCAG
GCCAAGGCCC TGGGCGAAAA AATCATCGAC ACGCTCGGCC AGCCCTACCA GTTCGGCAGT
TCCTCGCATT ACAGCACCGC CAGCATCGGC ATTACCCTGT TTGACGGCGC TCAGCAGGAA
AGCACCGAAG AACCCATGAA GCAGGTTGAA CTGGCCATGT ACCAGGCCAA GGCTGCAGGT
CGAAACACCC TGCGTTTCTT TGATCCACAG ATGCAGGCTG TGGTCACCGC TCGTGCTGTG
TTGGAGAACG GCTTGCGAGA AGCGCTGGAG CAAAACCAGT TCCTTCTTCA CTACCAGGCC
CAGATGGTCG GCGGGCGCCA GATCACAGGG GTTGAAGCAC TGGTGCGCTG GCGGGACCCG
CGGCGCGGCA TGGTGTCGCC GGTCGAGTTC ATTCCATTGG CAGAAGAAAC CGGGCTGATC
CTGTCGCTCG GTCAATGGGT ATTAGAAACT GCCTGCACCC AGTTGGCACG ATGGGCGACC
CGGGCCGAGA TGGAGCATCT GACAGTGGCG GTGAATGTTA GCGCGAACCA ATTTCAACAG
GGCGACTTCG TCGAGCAGGT GCTGGCAGTG CTGGAGCGCA CCGGCGCCAA CCCGAATCGG
CTCAAGCTGG AGCTGACCGA GAGCATGCTG ATATCGAATG TTGAGGGTGT CATCGCCAAG
ATGAGTGCAC TCAAAGGAAG AGGAGTGTGT TTCTCACTCG ATGATTTTGG CACCGGCTAT
TCGTCGCTGT CGTACCTCAA GCGCTTGCCA CTGGATCAAC TGAAGATCGA TCAAGGCTTC
GTGCGCGACA TCCTGATAGA TTCCAACGAC GCTGCCATTG CCAAGATGGT GATCGCCCTG
GCCGAGAGTT TGGGACTGTC GGTCATCGCT GAAGGGGTCG AAACCGAGGC GCAGCGCGAC
TTTCTGGCTG GTCTGGGCTG CCATGCTTAT CAAGGTTATC TGTTTTGCAA GCCTTTGCCG
CTGGAGGAGT TCGAGGCGTT TTTGCAACGG GCTTGA
 
Protein sequence
MNFHLLHLRS LKTRVTLFTL TIFMVSMWTL AFNTNRMLHA DMERVLGERQ FATVSMKAEE 
VNEELERRMQ ALENVAHRVS PALLANPAAL QALLEEHVIL QSLFNGGTYV TRTDGTAIAS
LPVSANRISI NYLDRDYLAA ALKEGRTIVG RPVLGKSINA PILGIGLPIR DTKGLVIGAL
AGVINLGQPN FLDKIAASHY GKTGGYLLIA PQHNLFITAT DKSRIMQPLP APGLNPMQDR
YMQGFNGFGT AVNSHGIEML SAAQRVPVAG WVAIALLPTA EAFAPINVMH QRMLLTTLFL
TLLAGALTWW VLRRELLPLF KAARSLATQA ETDQLPQPLP LTRQDETDQL ISGFNRLLQT
LTRREESLKE SEEQHRRLID NSHDVIYTLT KAGVFTFMSS AWTALLGHPL NQVVGQTVFT
FVHPEDVAVC TAFMQGVMAT GQSLEGIELR LRHLDGGWRW FHTNAVPLKN ETGKVIGLQG
SAMDVTVRKL AEEDTRIAAT AFESQQGMII TNAEKVILRV NKAFTEITGY TMEEALGQTP
RLLKSDRHDA GFYGAMWASV ARSGSWQGEI WRQRKSGEQY PEWLSINAVK DAAGLVTHYV
GVFSDITERK ISEEKIDRLA FYDALTGLPN RRLMIDRLQQ ALAATARHHC KGALLLVDLD
NFKTLNDTLG HDQGDLLLQH AARRLSACLR ESDTVARVGG DEFIVLMEDM SQSDQEVATQ
AKALGEKIID TLGQPYQFGS SSHYSTASIG ITLFDGAQQE STEEPMKQVE LAMYQAKAAG
RNTLRFFDPQ MQAVVTARAV LENGLREALE QNQFLLHYQA QMVGGRQITG VEALVRWRDP
RRGMVSPVEF IPLAEETGLI LSLGQWVLET ACTQLARWAT RAEMEHLTVA VNVSANQFQQ
GDFVEQVLAV LERTGANPNR LKLELTESML ISNVEGVIAK MSALKGRGVC FSLDDFGTGY
SSLSYLKRLP LDQLKIDQGF VRDILIDSND AAIAKMVIAL AESLGLSVIA EGVETEAQRD
FLAGLGCHAY QGYLFCKPLP LEEFEAFLQR A