Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1021 |
Symbol | |
ID | 3963736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 1077390 |
End bp | 1080545 |
Gene Length | 3156 bp |
Protein Length | 1051 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637915844 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_522295 |
Protein GI | 89899824 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.126981 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTTCC ACCTCCTTCA TCTGCGCTCG CTCAAAACCA GAGTAACGCT CTTTACGTTG ACCATTTTCA TGGTCAGCAT GTGGACGCTG GCCTTTAACA CCAACCGAAT GTTGCACGCG GATATGGAGC GCGTGCTGGG CGAACGGCAA TTCGCCACGG TTTCCATGAA GGCCGAAGAG GTCAATGAGG AACTGGAGCG CCGCATGCAG GCGCTGGAGA ATGTTGCCCA CCGAGTGAGC CCGGCCCTGT TGGCCAATCC GGCGGCCTTA CAGGCACTCC TGGAAGAGCA TGTGATTCTG CAGAGCCTGT TCAACGGTGG CACCTATGTC ACCCGCACGG ATGGCACCGC GATTGCCAGT CTTCCGGTTT CAGCGAACCG AATCAGCATC AACTACCTTG ACCGGGATTA CCTGGCCGCA GCCCTCAAGG AAGGGAGAAC GATAGTTGGT CGACCAGTCT TAGGCAAGTC CATAAATGCG CCGATTCTCG GCATCGGGCT CCCGATTCGC GATACGAAGG GACTGGTAAT TGGCGCCCTG GCCGGTGTGA TCAACCTGGG CCAGCCCAAT TTCCTGGACA AGATTGCAGC CAGCCACTAC GGCAAGACCG GCGGCTACCT GCTGATTGCA CCGCAGCACA ATCTGTTTAT CACCGCCACC GACAAGAGCC GCATCATGCA GCCGCTCCCG GCCCCGGGCC TCAATCCGAT GCAGGACCGG TACATGCAAG GCTTCAACGG ATTTGGGACC GCCGTGAACT CGCATGGCAT AGAAATGTTA TCAGCGGCGC AGCGGGTTCC GGTCGCTGGC TGGGTCGCTA TCGCCTTGCT GCCCACAGCA GAGGCTTTTG CCCCGATCAA CGTCATGCAT CAGAGGATGC TGCTGACGAC CCTCTTTCTT ACCCTGCTGG CAGGTGCTCT AACCTGGTGG GTGTTGCGGC GCGAACTGTT GCCGCTGTTC AAGGCGGCAC GCAGCTTGGC CACCCAGGCA GAAACAGACC AGCTCCCGCA GCCCTTGCCA CTCACCAGAC AGGACGAAAC CGATCAACTG ATCAGTGGCT TCAATCGGCT ACTGCAGACC TTGACGAGAC GGGAAGAGTC CCTGAAGGAG AGCGAAGAGC AGCACCGACG GCTGATTGAT AACAGCCACG ATGTGATCTA CACGCTAACT AAAGCGGGGG TATTTACCTT CATGTCGTCG GCCTGGACCG CGCTGCTGGG GCATCCGCTC AACCAGGTCG TCGGGCAGAC AGTCTTTACT TTTGTTCATC CGGAAGATGT TGCCGTGTGC ACGGCGTTTA TGCAAGGCGT AATGGCGACA GGGCAATCGC TAGAGGGCAT CGAATTGCGT CTTCGCCACC TCGACGGAGG CTGGCGTTGG TTCCACACCA ATGCAGTTCC GTTAAAGAAC GAAACCGGGA AAGTCATTGG TTTACAGGGA AGCGCGATGG ACGTCACCGT GCGCAAACTG GCAGAGGAAG ATACCCGCAT CGCTGCTACC GCCTTCGAGT CACAGCAAGG CATGATCATT ACCAATGCCG AGAAAGTGAT CCTGCGCGTC AACAAGGCTT TCACCGAGAT TACCGGCTAC ACGATGGAAG AAGCTTTGGG CCAGACGCCA AGACTGCTCA AATCAGATCG CCATGACGCA GGCTTTTATG GCGCCATGTG GGCGAGCGTC GCGCGTAGCG GGTCATGGCA AGGCGAAATA TGGAGACAAC GCAAGAGTGG CGAGCAGTAT CCAGAATGGC TCAGCATCAA CGCGGTGAAA GACGCTGCAG GGCTGGTCAC TCACTACGTT GGCGTCTTCA GCGATATCAC TGAACGCAAA ATATCCGAAG AAAAAATCGA TCGACTGGCC TTCTACGACG CCTTGACCGG CTTGCCCAAT CGCCGACTCA TGATCGATCG GCTGCAGCAG GCCTTGGCCG CCACCGCCCG CCACCACTGC AAGGGCGCGC TGCTGCTCGT TGATCTGGAT AACTTCAAAA CCCTCAATGA CACCCTGGGC CATGACCAGG GCGATCTGCT ACTGCAGCAC GCCGCCAGGC GTCTGTCTGC ATGCCTGCGC GAGAGCGACA CCGTGGCCCG CGTAGGCGGT GATGAATTCA TCGTGTTGAT GGAAGACATG AGCCAGAGTG ACCAAGAAGT TGCCACCCAG GCCAAGGCCC TGGGCGAAAA AATCATCGAC ACGCTCGGCC AGCCCTACCA GTTCGGCAGT TCCTCGCATT ACAGCACCGC CAGCATCGGC ATTACCCTGT TTGACGGCGC TCAGCAGGAA AGCACCGAAG AACCCATGAA GCAGGTTGAA CTGGCCATGT ACCAGGCCAA GGCTGCAGGT CGAAACACCC TGCGTTTCTT TGATCCACAG ATGCAGGCTG TGGTCACCGC TCGTGCTGTG TTGGAGAACG GCTTGCGAGA AGCGCTGGAG CAAAACCAGT TCCTTCTTCA CTACCAGGCC CAGATGGTCG GCGGGCGCCA GATCACAGGG GTTGAAGCAC TGGTGCGCTG GCGGGACCCG CGGCGCGGCA TGGTGTCGCC GGTCGAGTTC ATTCCATTGG CAGAAGAAAC CGGGCTGATC CTGTCGCTCG GTCAATGGGT ATTAGAAACT GCCTGCACCC AGTTGGCACG ATGGGCGACC CGGGCCGAGA TGGAGCATCT GACAGTGGCG GTGAATGTTA GCGCGAACCA ATTTCAACAG GGCGACTTCG TCGAGCAGGT GCTGGCAGTG CTGGAGCGCA CCGGCGCCAA CCCGAATCGG CTCAAGCTGG AGCTGACCGA GAGCATGCTG ATATCGAATG TTGAGGGTGT CATCGCCAAG ATGAGTGCAC TCAAAGGAAG AGGAGTGTGT TTCTCACTCG ATGATTTTGG CACCGGCTAT TCGTCGCTGT CGTACCTCAA GCGCTTGCCA CTGGATCAAC TGAAGATCGA TCAAGGCTTC GTGCGCGACA TCCTGATAGA TTCCAACGAC GCTGCCATTG CCAAGATGGT GATCGCCCTG GCCGAGAGTT TGGGACTGTC GGTCATCGCT GAAGGGGTCG AAACCGAGGC GCAGCGCGAC TTTCTGGCTG GTCTGGGCTG CCATGCTTAT CAAGGTTATC TGTTTTGCAA GCCTTTGCCG CTGGAGGAGT TCGAGGCGTT TTTGCAACGG GCTTGA
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Protein sequence | MNFHLLHLRS LKTRVTLFTL TIFMVSMWTL AFNTNRMLHA DMERVLGERQ FATVSMKAEE VNEELERRMQ ALENVAHRVS PALLANPAAL QALLEEHVIL QSLFNGGTYV TRTDGTAIAS LPVSANRISI NYLDRDYLAA ALKEGRTIVG RPVLGKSINA PILGIGLPIR DTKGLVIGAL AGVINLGQPN FLDKIAASHY GKTGGYLLIA PQHNLFITAT DKSRIMQPLP APGLNPMQDR YMQGFNGFGT AVNSHGIEML SAAQRVPVAG WVAIALLPTA EAFAPINVMH QRMLLTTLFL TLLAGALTWW VLRRELLPLF KAARSLATQA ETDQLPQPLP LTRQDETDQL ISGFNRLLQT LTRREESLKE SEEQHRRLID NSHDVIYTLT KAGVFTFMSS AWTALLGHPL NQVVGQTVFT FVHPEDVAVC TAFMQGVMAT GQSLEGIELR LRHLDGGWRW FHTNAVPLKN ETGKVIGLQG SAMDVTVRKL AEEDTRIAAT AFESQQGMII TNAEKVILRV NKAFTEITGY TMEEALGQTP RLLKSDRHDA GFYGAMWASV ARSGSWQGEI WRQRKSGEQY PEWLSINAVK DAAGLVTHYV GVFSDITERK ISEEKIDRLA FYDALTGLPN RRLMIDRLQQ ALAATARHHC KGALLLVDLD NFKTLNDTLG HDQGDLLLQH AARRLSACLR ESDTVARVGG DEFIVLMEDM SQSDQEVATQ AKALGEKIID TLGQPYQFGS SSHYSTASIG ITLFDGAQQE STEEPMKQVE LAMYQAKAAG RNTLRFFDPQ MQAVVTARAV LENGLREALE QNQFLLHYQA QMVGGRQITG VEALVRWRDP RRGMVSPVEF IPLAEETGLI LSLGQWVLET ACTQLARWAT RAEMEHLTVA VNVSANQFQQ GDFVEQVLAV LERTGANPNR LKLELTESML ISNVEGVIAK MSALKGRGVC FSLDDFGTGY SSLSYLKRLP LDQLKIDQGF VRDILIDSND AAIAKMVIAL AESLGLSVIA EGVETEAQRD FLAGLGCHAY QGYLFCKPLP LEEFEAFLQR A
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