| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1012 |
|---|
| Symbol | |
|---|
| ID | 3963727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1068094 |
|---|
| End bp | 1069410 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637915835 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_522286 |
|---|
| Protein GI | 89899815 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0303063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCAT CCAAACTGAT AGGCAAGACT CGCGGGGGCC TGGTCAGCAT GCTGGCGGCT
GCGAGCCTGC TGACATTGGC CGGCGCAGCG CAGGCCCAGG AGACATTCAA GCTCGGCGTT
GTGACCTTCC TGTCGGGCCC GGCTGCCGAG AGTTTCGGCA TGCCTGCCGC CAATGCCGCC
AAGCTCATGG TCGAGCAGTT CAACAAGGCC GCAGCACCAG CTCCGTACAA CAAGGTTGGT
TTTGGCGGCA TGAAGATTGA AATGGTTCTC GTCGACGAGA ACGGTGGTGG CGCAAAACAG
GTGCAGGAGC TGCGCAATCT GTACCAGCGC GAAAACGTTG ACGCGGTGAT TGGCTACGTT
GGCTCGGGCG ATTGCCTGGC CGTGGCGCCG GTCGCTGACG AACTCAAGAA ATTCCTCGTC
TTGTTCGATT GCGGGTCACC GCGGATTTTT GAGGACGCCA GTCCGAAGTA CGTTTTCCGG
ACGGCCTCGC ACGCCGCCAT GGACAACGTG TCACTGGTGC GCTATCTTAA ATCCCACAAC
GTCAAAGTCA ACACCATGAA CCTGATCAAT CAGGATTACG CGTGGGGGCA GGATTCACGC
GGGGATTTCC TGGCCAGTAT GGCGAACGTC TATCCCCAGG CAAAAATGGG TGCGGATCTG
TTGCCCAAGT TTGGCGCCGG CCAATACGGG ACCGAGGTCT CGGTACTCGG GGGCAAGCAG
GCTGACATCA CCTATTCCAG CCTGTGGGGC GGTGACTTGC AAGGCTTCCT GTTGCAGGGT
GCAGCGCGCG GCCTGTTCAA GGATACAACC CTGGTCCTGA GCGCGGCAGA TCACGTTTTG
CCGGGCTTGC TCGACAAGAT GCCTGACGGT TCGATCATCG GCGCGCGCGG CGCTTACGGC
ATTCTGTCGG CCAAGAGCCC TATCAATGAC TGGTTTCAGG CCAGCTACCA GTCCATGCAC
AAGGTGCTTC CGGTGCAGGC CGGCTATCGT ATGACGCAAG CGTTCATGGG CGTGAAGCTG
GCAGTCGAGA CTGCAATGGC CAAGAACGGC GGCAAGAAGC CCTCTCCGGA ACAGATTTCT
GATGCCCTGC GCAACTCGAC ATTCGAGACC CCCGGCGGAC AGATTCGCAT GGCCCTCGGT
GATGGCCATC AGGCCATTCA GGGCACTGCC ATTGGCAGGA CGAGATACGA CGCTGCCAGC
AAGCGCGTGC TGGCGGTCGA CGTGCAGACC TTTGGCGCTG AATGCGTCAA TCCACCCGCA
AACATGAAGA GCATGGATTG GATCAAGGCC GGCTTTCCCG GCGCCAAATG CAACTAA
|
|---|
| Protein sequence | MISSKLIGKT RGGLVSMLAA ASLLTLAGAA QAQETFKLGV VTFLSGPAAE SFGMPAANAA
KLMVEQFNKA AAPAPYNKVG FGGMKIEMVL VDENGGGAKQ VQELRNLYQR ENVDAVIGYV
GSGDCLAVAP VADELKKFLV LFDCGSPRIF EDASPKYVFR TASHAAMDNV SLVRYLKSHN
VKVNTMNLIN QDYAWGQDSR GDFLASMANV YPQAKMGADL LPKFGAGQYG TEVSVLGGKQ
ADITYSSLWG GDLQGFLLQG AARGLFKDTT LVLSAADHVL PGLLDKMPDG SIIGARGAYG
ILSAKSPIND WFQASYQSMH KVLPVQAGYR MTQAFMGVKL AVETAMAKNG GKKPSPEQIS
DALRNSTFET PGGQIRMALG DGHQAIQGTA IGRTRYDAAS KRVLAVDVQT FGAECVNPPA
NMKSMDWIKA GFPGAKCN
|
|---|
| |