| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1011 |
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| Symbol | |
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| ID | 3963726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1065637 |
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| End bp | 1067949 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637915834 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_522285 |
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| Protein GI | 89899814 |
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| COG category | [I] Lipid transport and metabolism
[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTACTG AGGTGGTGGT TTCCCCGTGG AAATCAAAAC AGGACCGCCG TCAGGGCCGT
AGCGTCAAGA AGGATGCGGT GCTGCTCGCG GCTGCGCGCC TGTTCAATGA GCGGGGATTC
GCGGGCACAT CCCTTGACGA CATTGCGCAA AGCCTGAATG TCACCAAACC GACGCTCTAC
TACTACATTG AAAACAAGGA GCAGGTGCTT TTCGAGTGCG TCAAGCGTGG TTTGGAAGTC
TTGCGCGAAA GCATCCGTGC GGCAACCCAA CACGGTCTGC AGGCCCGTGA TTGCCTGCGC
ATTGCCATGG AGAACTATGC CGAGGTCGTC ACCAGCGATT TCGGACTCTG TGTCATCAGG
GTCGGGGAAG ATCCACTGTC GGAAGCGAAG CGACAGGAGA TGCGTGCGCT CAAGCGCGAA
ATCGATGCTG AATTTCACCA ACTCATTGAA CAGGGCATGG ATGAAGGCTG GATTGCCCAG
GGCGATTCGA AAATCGCATC GTTCACCGTG GTCGGTGCTC TGAGCGGCAT TGGCCGCTGG
TATCGACCCG GCGTGCATGG GGCACGCAGC TTGCAGGAGG CGGTGCAGCA TTGCATTGAA
ATGCTGATGC ATGGTGCGTT GAACATGCCA ACCCATGCGG ACAGCGCCGC CTTGGATGGC
GCGGTGGCGC CGAACTTTCA GCAACTGGGC GCTGAGCGCC AGTTGATGGA AGCTGCCATG
CCACAGATCA GAAGGGAACT TCATTCTGGC GGTCGCATGA TCCGTTGCTT CTATCAGCGC
CCCTCGACCA TTGCGGAAAT GTTGATCGTC GCATTGGAGC AAAACCCGGA CGGGGAGGCG
CTGGTCGTCA GTGGACTGCA CCTTACCTGG CGCGAGCTTT ACACCGCGGC CACCCGGTGC
GCCGCCGGCT TGTCCGGGCG GGGCGTCGCA CCTGGCGAAC GGGTGGCAAT GTTCATGGCC
AATTGCAGCG AATTTGTGAT TGCGACCTAT GCCTGTGCCT GGATTGGTGC GGTGGTCGTC
CCCATCAACG CCCGGGCACG GACACCGGAA GTCCAGTACA TCCTGGAAGA CTCGGGCGCT
ACCGTCTTGT TGTGTGCTTC CGACTTGGCG CAAATGGTTC CTGCCACGGC TGCGGTGCCA
GGCCTGATGC ATCGGTTTGT TGCGGGCCCG ACGGTTGCGG CGCCGTTTGA ATCCTTCTCC
GTGCTGATGC AGGAGTCGCC GCTCGCCACA CCCACGATGC GACAGGAAGA AGATCTTGCA
GCCTTGCTCT ACACCTCGGG AACGACCGGC AAGCCCAAGG GCGCGATGCT GAGCCATCTG
AATATCGTGC ACTCGGCCAT GAACTTCGCC TTGACGATGC AGCTCACGAA TCAGGACCGA
AGCATGCTGG CGGTGCCCAT GAATCACGTC ACAGGATTGG TCGGCCAGCT CTACACCATG
CTTTACTGCC AAGGCTGCGT CGTGGTCATG CCGCAGTTCA AGGCGCTGGA GTTTGCGCGA
CTTGCTGCGC TTGAAAGAAT CACACACACG GTGATGGTGC CGGCCATGTA CAACCTGTGC
TTGTTGCTGC CGGGCCTGGC TGATCATGAT CTGAGTCGGT GGCGCATTGG TGCTTTTGGC
GGTTCGCCGA TGCCACCTGC CAGCATCGAG GCGCTTGCAC GCAAGTTGCC GACGTTGGCT
CTGATGAATG CTTATGGCGC GACCGAGACC TCTTCCCCGG CCGCCATCAT GCCGGCAGAC
ATGACCAATG GCCGGACCGA CAGCGTCGGC ATCACAGTGC CTTGCGGTGA AATTTGCGTT
GTCGACGAGA CCGGTTGTGA AATGCCACAC GGAAAAATCG GTGAGCTTTG GATCAAAGGG
CCGATGGTTG TCGGCGGCTA TTGGAACAAT CCTGAAGCCA CTGCCACGGA ATTTTGCGAT
GGCTATTGGC GCTCGGGTGA TATTGGAACA ATGGATACGC AGGGTTTCGT TCGCATCCTG
GACCGCAAGA AGGATGTCAT CAACCGCGGC GGTTACAAGG TGTTTTGTGC GGAAGTCGAG
AACTTGTTGG CACAGCACAG CGCGGTCATT GAGTCCGCGG TTGTCGGTGT CCCCTGCTCG
GTGCTGGGGG AGCGTGTGCA CGCATTTGTC TGCGTATCGG TGCTGGATGA TTCGACGCAG
GCGCAGGCGT TTCAGGCGCT GTGCAGCGCG GAGCTGAGTG ACTACAAGGT TCCGGAAACC
TGGACGATTG GCACCGATCC GCTTCCGCGC AACCCGAACG GGAAGGTCAT GAAACGTGAA
TTGCGTCGTT CCATGCACGC GGCACTGACC TGA
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| Protein sequence | MITEVVVSPW KSKQDRRQGR SVKKDAVLLA AARLFNERGF AGTSLDDIAQ SLNVTKPTLY
YYIENKEQVL FECVKRGLEV LRESIRAATQ HGLQARDCLR IAMENYAEVV TSDFGLCVIR
VGEDPLSEAK RQEMRALKRE IDAEFHQLIE QGMDEGWIAQ GDSKIASFTV VGALSGIGRW
YRPGVHGARS LQEAVQHCIE MLMHGALNMP THADSAALDG AVAPNFQQLG AERQLMEAAM
PQIRRELHSG GRMIRCFYQR PSTIAEMLIV ALEQNPDGEA LVVSGLHLTW RELYTAATRC
AAGLSGRGVA PGERVAMFMA NCSEFVIATY ACAWIGAVVV PINARARTPE VQYILEDSGA
TVLLCASDLA QMVPATAAVP GLMHRFVAGP TVAAPFESFS VLMQESPLAT PTMRQEEDLA
ALLYTSGTTG KPKGAMLSHL NIVHSAMNFA LTMQLTNQDR SMLAVPMNHV TGLVGQLYTM
LYCQGCVVVM PQFKALEFAR LAALERITHT VMVPAMYNLC LLLPGLADHD LSRWRIGAFG
GSPMPPASIE ALARKLPTLA LMNAYGATET SSPAAIMPAD MTNGRTDSVG ITVPCGEICV
VDETGCEMPH GKIGELWIKG PMVVGGYWNN PEATATEFCD GYWRSGDIGT MDTQGFVRIL
DRKKDVINRG GYKVFCAEVE NLLAQHSAVI ESAVVGVPCS VLGERVHAFV CVSVLDDSTQ
AQAFQALCSA ELSDYKVPET WTIGTDPLPR NPNGKVMKRE LRRSMHAALT
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