| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0989 |
|---|
| Symbol | |
|---|
| ID | 3963588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1038670 |
|---|
| End bp | 1040082 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637915813 |
|---|
| Product | amidase |
|---|
| Protein accession | YP_522264 |
|---|
| Protein GI | 89899793 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATT TTTTACAGCT GGACCTGGTC GGCGTTGCCG ACGCAATTGC GCAAAAGCGC
TTCAGCGCAC AGGAGATCGT AGCCTGGTCG CTGCAGCGGC TCGAATCCAT TGGACGCAAT
TTGAACGCCA TATTCCGCAT CGATCACGAG GATGCGATGG TGCGCGCCCG CTCGCTGGAC
GATCTGCAGT CCCGCAGGGG CACTTGTGGA CCGCTGCATG GCGTGCCGTT GGCGCACAAG
GACCTGTTCG GCATCGTTGG CCGTGAATGC CATGCCGGCT CGCTTATCTT GCGCGGACAG
GTGGCGGCAC GTAACGCATG GGTTATTGAT GAACTGAATG CTGCGGGACA GGTGAATCTG
GGCTCGCTTC ACATGGCCGA GTTTGCCGTG AGCCCGACCG GCTTCAACGC GCATTACGGC
CACGGCCGAA ATCCATGGAG TCCGATGCAC GTCTGCGGCG GTTCGTCGAG CGGCTCTGGC
ATTGCGGTGG CATCACGTCT GGTGTTTGGC TCGCTGGGCA CCGACACCGG CGGCTCGATC
CGCCATCCCG CCGCCATGTG TGGCGTTACC GGATTGAAGA CGACCTTCCG CCGGGTGAGC
GTAGCCGGTG TGGTGTCGCT GTCCTCCTCG CTGGATTGCG TCGGGCCACT GGCACAAAGC
GCGCGCGATT GCGCCCGACT GCTGACGCAC ATCAGTCGGC CCAATCCGGA TGATGGTTTG
TGTACAGGGG TCGCGAATCA GGATTACGAA AACGGATTGG ATGGCGACCT GCGCGGTCTG
CGCGTCGGCG TGCCGGAACA TTATTACCGA GACAACCTCG ACCCCGAGGT CGCAGCGGCG
CTGCAAACCA GCCTGGAAGT CTTGCGGGCC CGCGGCGCAA CGCTGGTCAC TGTAGCCGTA
CCGGACATGG CATTGATCAA TGCGATGATG CAGCTCATCA TGTCGGTGGA AGCGGCAGCG
CTGCACCGCA AGTGGATCGA ATCGCGGCCG CAGGATTATG CTGAGCAAGT GCGCTTGCGC
ATCGAGGCCG GCTTTGCCTA TTCCGCTGTA CGTTACGTGG AGGCGCTAGC GCTACGCGTG
AGGCTGACCG AGGAATATCT ACAGACCAGC TTCGCCAGCT GCGATCTAAT CCATGTTCCG
ACCATACCAG TGCAAACGCC AACCATTGCC GCGACGACCG AAGGCGATCT TCAGGCCATC
CTGCAAACTA TCGGCCGCAT CACGCATGCC ACGCGCGGCG TCAACTATCT GGGCCTGCCT
GCCATCAGCG TACCTGCCGG GATATCAAGC GAAGGTATGC CCCTGTCATT CCAGTTGATC
GGCCGACCTT TCGATGAAGC GCTGCTCTTG AAAACTGCGG ACGCTTTCCA GCGCGAGACC
GACTGGCATC GCCGTCGCCC GCCAATACAA TGA
|
|---|
| Protein sequence | MSDFLQLDLV GVADAIAQKR FSAQEIVAWS LQRLESIGRN LNAIFRIDHE DAMVRARSLD
DLQSRRGTCG PLHGVPLAHK DLFGIVGREC HAGSLILRGQ VAARNAWVID ELNAAGQVNL
GSLHMAEFAV SPTGFNAHYG HGRNPWSPMH VCGGSSSGSG IAVASRLVFG SLGTDTGGSI
RHPAAMCGVT GLKTTFRRVS VAGVVSLSSS LDCVGPLAQS ARDCARLLTH ISRPNPDDGL
CTGVANQDYE NGLDGDLRGL RVGVPEHYYR DNLDPEVAAA LQTSLEVLRA RGATLVTVAV
PDMALINAMM QLIMSVEAAA LHRKWIESRP QDYAEQVRLR IEAGFAYSAV RYVEALALRV
RLTEEYLQTS FASCDLIHVP TIPVQTPTIA ATTEGDLQAI LQTIGRITHA TRGVNYLGLP
AISVPAGISS EGMPLSFQLI GRPFDEALLL KTADAFQRET DWHRRRPPIQ
|
|---|
| |