| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0917 |
|---|
| Symbol | |
|---|
| ID | 3963671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 961083 |
|---|
| End bp | 963341 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637915745 |
|---|
| Product | penicillin-binding protein 1A |
|---|
| Protein accession | YP_522196 |
|---|
| Protein GI | 89899725 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACATC TAATCTCTCC ATTTCTCTGC CGGCTGGTGC TGCTGTGGGC GGTTGCCTTG
CCCTTCGCAT CTGCCGCCAC GCCGTTGGAT TTACCGAATC TGGACGCCTT AATGGACTAT
CGGCCAAAAA TTCCGCTGCG CGTGTACACC AGCGACAACG TGCTCATTGG TGAATTCGGT
CAGGAGAGGC GCGACGTTGT CGCGATCAAG GACATTCCAC TTGTCCAGAA ACAGGCCCTG
CTGGCGATCG AGGATTCGCG CTTTTACGAG CATGGTGGCG TTGACTTTAA GGGCATGGCG
CGAGCCGTGA TTGCCGACTT GAGCGGCGGG CTCAAACAAG GTGCTTCAAC GATCACCATG
CAAGTGGCAC GTGACTTCTT CCTCACCAAG GAGAAACTGT TTTCGCGCAA GGTGACGGAG
GTGATGCTGG CCTACAAAAT CGAGCGGGCG TTAACCAAAG ACCAGATATT GGAACTCTAC
ATGAACCAAA TCTACATGGG TCAGCGGACA TATGGATTCG GCAGTGCGGC TCGGGTCTAT
TTTGGCAAAG CACTCAAGGA TCTGAGCATC GCGCAGGCGG CCATGCTGGC CGGCCTGCCT
CAAGCGCCGT CAAGCATCAA CCCGGTGGCT AACCCCAAAG GTGCCAAAGC GCGCCAACAC
CTGGTGCTGA GGCGCATGCG CGATCTGGGT TATATCAACG AAGCGCAATA CAAGTCCGCG
CTTCAGGAGA ACATTCATAC GCTCGGCGAA GGCCAGTCGA TCAACGGCCA TGCGCAATTT
GTTGCAGAAA TGGTGCGCCA GACGATGTAC GCCCAGTTCA AGGAAGAAAC CTACACCAGA
GGAATCAGCG TCATCACTAC GCTTGTGCAG TCCGACCAGG AGGCCGCATA TGACGCAGTG
CGGCGCAATG TAATGGCTTT CGACCAACGC CATAGTTACC GTGGTCCGGA GGCCCTTGTG
GCTTTACCTC GCAACACCAT TGAGCGCCAA AAATCGATTG AAGCTACCCT GCAACAACAT
CCCGCCAGTG ACAAGTTATT GTCTGCTGTG ACCATCGCTG TGACACCAAA AAGCCTGCGT
GCGATATTGA CCACTGGTGA TGAGATCCAG ATCGGCGCAG AAGGCCTGCG CAGGGCTGCA
GCGGCCCTGG CGCCCACGGC ACCATCGACA CTCAAGATCA AGCCGGGTTC CGTGATCCGT
GTGGTGCAAG ATAGTCGGGG CCGCTGGAGC ATCACGCAAT TGCCCGTCGT AGGTGCGGCC
TTTGTGGCGC TGAACAATCA GACTGGAGCA TATCGCGCAT TGGTGGGCGG CTTTGATTTC
AATGCCAGCC AGCTCAATCA CGTTACCCAG GCATGGCGCC AACCGGGGTC AGCCATCAAG
CCCTTCATTT ATTCCGCTGC GCTGGAAAAA GGTTTTTCGC CAGGCACCCT CGTTAACGAT
GTGCCGCTGA CGCTGAGTGG TCTGGAGACC GGCGGTCAGC CCTGGCAACC ACAGAATGAC
GATGACGTAT ACGACGGCCC AATCACCCTG CGTGTTGCAC TTGCACAGTC CAAAAACGTT
GCTGCAGTGC GCCTGCTGCG CGCCATTACG CCGAAGTACG CACATGACTT TTTGCCCCGT
TTTGGCTTTG ATGCCACCAA GCAGCCAGTG AACTACACCC TGGCGCTGGG CACTGGTTCA
GTCACTCCCC TACAAATGGC GCAGGCCTAC TCGGTGTTTG CCAACGGGGG TTTTCAGGTC
AACCCTCACT TGATTAAAAA GGTAGTGGAC ACGCGTGGCA CCGTGCTCTT TGAGGCCAAG
CCGACTGTTC CCGCGCAGGA GACCGCGCGC GTGCTCGATG CGCGCAAGGC GTTCATCATT
GACAGCATGT TGCATGAAGT CACTAGCTCG GGCACCGGTG CTGCCGCATC TCAAAAGCTT
GGACGGCAGG ACCTGGCGGG CAAGACGGGC ACCAGCAGTC AGTCTTTCGA CGGCTGGTTT
GCGGGCTACA GCGGTGACAC GACAGCGGTG GCATGGATGG GTTACGACGA ACCCCGGTCT
CTGGGTGGAC GCGAGTTTGG TGCCACATTG GCGCTGCCCA TATGGATCGA TTTCATGCGC
GTTACATTGG CCGGCATGCC GCTCAACCAA GCCCTGAAGC CGGCTGGAGT TACGCAATCT
CAGGGTGACT GGATGCTTGA CGAATTTCTA AACACCGGTG CCATTCGCAC GCTGGACCTG
GACGCTCCGC AAGCACTGGA GGAATTGGCT AGCCCTTGA
|
|---|
| Protein sequence | MKHLISPFLC RLVLLWAVAL PFASAATPLD LPNLDALMDY RPKIPLRVYT SDNVLIGEFG
QERRDVVAIK DIPLVQKQAL LAIEDSRFYE HGGVDFKGMA RAVIADLSGG LKQGASTITM
QVARDFFLTK EKLFSRKVTE VMLAYKIERA LTKDQILELY MNQIYMGQRT YGFGSAARVY
FGKALKDLSI AQAAMLAGLP QAPSSINPVA NPKGAKARQH LVLRRMRDLG YINEAQYKSA
LQENIHTLGE GQSINGHAQF VAEMVRQTMY AQFKEETYTR GISVITTLVQ SDQEAAYDAV
RRNVMAFDQR HSYRGPEALV ALPRNTIERQ KSIEATLQQH PASDKLLSAV TIAVTPKSLR
AILTTGDEIQ IGAEGLRRAA AALAPTAPST LKIKPGSVIR VVQDSRGRWS ITQLPVVGAA
FVALNNQTGA YRALVGGFDF NASQLNHVTQ AWRQPGSAIK PFIYSAALEK GFSPGTLVND
VPLTLSGLET GGQPWQPQND DDVYDGPITL RVALAQSKNV AAVRLLRAIT PKYAHDFLPR
FGFDATKQPV NYTLALGTGS VTPLQMAQAY SVFANGGFQV NPHLIKKVVD TRGTVLFEAK
PTVPAQETAR VLDARKAFII DSMLHEVTSS GTGAAASQKL GRQDLAGKTG TSSQSFDGWF
AGYSGDTTAV AWMGYDEPRS LGGREFGATL ALPIWIDFMR VTLAGMPLNQ ALKPAGVTQS
QGDWMLDEFL NTGAIRTLDL DAPQALEELA SP
|
|---|
| |