| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0879 |
|---|
| Symbol | |
|---|
| ID | 3963653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 917327 |
|---|
| End bp | 918271 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637915707 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_522158 |
|---|
| Protein GI | 89899687 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCATGT TTCGTAAAAC CTTTTTACCA CCCATTGCCG ACCTGCTGGC TTTCGAGGCC
GCCGCGCGCC ACACCAGCAT TTCTCGTGCG GCGGAGGAGC TGCACCTGAC GCAAAGCGCC
GTGTCGCGCC AGATTCGGCA ACTGGAGACG CAACTCGGCA TGGCCCTGTT TCACCGTGTC
CGCCAGCGCG TGGTGTTGAC CGACGCAGGT CGGGTCTACG CGGCAGACGT GCGAGCGGTC
TTGCAGCAGC TCTCCGGCGC AACACAAAAA ACCATGACTT GGTCCGACGG TGCAGGACTG
CTGAATCTGG CAGTGCTGCC CACCTTGGGA ACACGCTGGC TGATTCCACG CTTGGGTGAT
TTTGCGGCAC ATTACCCGAG CGTGACCGTG AACATGGCCG CGCGCAGCGA ACCCTTCGAC
TTCTCACTGG TGCCACTGGA CGCGGCCATC CACTTCGGCG CGCCGCACTG GGCAGGTGCA
GTGTGTGAAT ATCTGATGCA CGAGCAGGTG GTGCCAATGT GCAGCCCCGG CTATCGGGCC
CAGCACGGCA TCACACAGGT GCAGGACTTG TCCACAGTTG TGTTGCTACA GCAAACAACG
CGCCCCACCC AGTGGGCCGA CTGGCTAGGG CAGGTCGGGG CCGACGGCGT TTATGCCTTG
CGTGGTCCTC GCTTCGAACA GTTTGCAATG ATTGCGCAGG CCGCGGTGGC GGGTCTGGGC
GCGGCGCTGC TGCCACGCTT TTTGGTGGAA ACCGAGATCG CCTCGGGTGC GCTGGTCGAG
CTATTCCCCC AGGCATTGAC CAGTACAGAT GCCTACTACT TGGTCTACCC CGAGTCGCGC
GCTCAGGCTC CACTGGTGCG CGTATTTCGC GACTGGATTC TGGAACAATG CGCTCGAAAT
CTCTCACGCC AAGACAGGCA AAGTAGCAAC CAAACGCCGG CATAG
|
|---|
| Protein sequence | MTMFRKTFLP PIADLLAFEA AARHTSISRA AEELHLTQSA VSRQIRQLET QLGMALFHRV
RQRVVLTDAG RVYAADVRAV LQQLSGATQK TMTWSDGAGL LNLAVLPTLG TRWLIPRLGD
FAAHYPSVTV NMAARSEPFD FSLVPLDAAI HFGAPHWAGA VCEYLMHEQV VPMCSPGYRA
QHGITQVQDL STVVLLQQTT RPTQWADWLG QVGADGVYAL RGPRFEQFAM IAQAAVAGLG
AALLPRFLVE TEIASGALVE LFPQALTSTD AYYLVYPESR AQAPLVRVFR DWILEQCARN
LSRQDRQSSN QTPA
|
|---|
| |