| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0822 |
|---|
| Symbol | |
|---|
| ID | 3964181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 856890 |
|---|
| End bp | 859091 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637915652 |
|---|
| Product | primosomal protein N' |
|---|
| Protein accession | YP_522103 |
|---|
| Protein GI | 89899632 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000167881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATC AGCTTGCAGT TCTGGTTCAC ACGCCAGTCC ACAGTGCCGT CGCCGGGACG
CTGAGCTATG TCAGTGAGTT GCCACTTACC GTCGGTAGCT TGGTGCGTGT GCCACTGGGT
CAGCGTGAGC TCTTGGGCGT GGTGTGGGAC GCGCCACTTG ATTCCCCAGC GGCCAGCTTT
GATCCGCAGA AACTGCGTCC CATCAGCAGT GCCCTGGACG GTATTGCGCC GCTGAGCGCC
AGCTGGCGCC AGCTGGTGAC CTTTGCGGCC CATTATTACC AGCGCTCCGT GGGCGAGGTG
GCGCTGGCAG CCTTGCCGCC ACAATTGCGC GACCTGAGCA CCCAGCAGTG GGGCCGTCGC
CTCAAACGTC ACGCCAAGGC GGGGGCAGTG GGCGAGCCTG CCCTGGTTGA TGCTTCTGAA
TTAGTAGCGC TTAGTCCAGA GCAGACGGGG GCTATAGCCC AATTTAATAC AAATTCAGGG
CCGTTTTTGT TGTTCGGCGC GACCGGCAGC GGCAAAACCG AAGTCTATTT GCAATGCGTC
GAACAGTTGC TCGTGCGCGA GCCCGATGCC CAGGCGATGG TGATGGTGCC CGAGATCAAC
CTCACGCCGC AGTTGGAGGC GCGTTTCATG GCGCGGTTTG CTCCCATGTA TGGTGACGGC
GCCGTGGTGT CCATGCACAG CGGCATGACG CCGGCGCAGC GTTTGAAGAG CTGGCTCGCG
GCCCACAGCG GAGCCGCCCG CATCGTGCTG GGCACACGCA TGGCCATCTT TGCCTCGCTG
CCCAAACTCA AGCTGATCAT CGTGGACGAG GAGCACGACC CGAGTTACAA GAGCGGGGAG
GGCGCCCGCT ACTCGGCGCG TGATCTGGCG GTGTACCGGG GCCGGCTCGA CGGCGCCAAG
GTCATGCTGG GCTCGGCAAC ACCGTCGCTG GAGAGCTGGC ACCACAGTCG TCCGGCGGCA
GAGGGTGGGC GCTACCTGCG CCTGGTCATG CCCAGTCGCA TCGGCAGCAT CACCGCGCTG
CCCACCGCGC AAGGCGACAC AACACGGCTG GTGAACGATG CGGCCGCCGC CAGCGCTGGC
CTGCCCGTGG TGCGCCGGGT GGACATGAAT CACCAGCCCA AGCATTGCGT GTTTTCGCCA
CCTCTGCTGG CCGCCATCAT GGAGCGCATC GCGCGCGGCG AACAAAGCAT GGTGTTCTTG
AACCGGCGCG GCTACGCCCC GGTGCTGCAC TGCGCCGACT GCGACTGGAA AAGCGAATGC
CCGCATTGCA GCGCCTACCG GGTCTTTCAC AAAATCGACC GCACCCTGCG TTGCCACCAC
TGTGGCTATG CCGAGCGCGT GCCCCGTGCC TGTCCCGCCT GCGGCAACCC TGACATCGCG
CCGATGGGCC GTGGCACCGA GCGGCTGGAA GAACACCTGG CCGAGCTGCT GTTGGAGGTG
CGTCGCCCCA ACTCGGTGTC AGATCAATGG CCCGAGGGCG AACCGGTGCG CATCGTGCGC
ATCGATGCCG ACAGTACCAA ACTGAAAGGC GAGCTCCAGG CGCAGCTGGC CCGGGTGCAT
TCGGGTGAGG TGGACGTGCT GGTCGGCACA CAGATGATTG CCAAAGGGCA CGACTTTCGC
CGCATCACGC TGGTGGCCGC CATCAACCCC GATAACGCGC TGTTTTCGAG TGACTTCCGG
GCGCCCGAGC GCCTGTTCAG CCTGCTGATG CAAGCCGCCG GCCGCGCCGG GCGCGACGCC
GACATCAGCG GCCAAAGCGA GATGTGGGTG CAGACCTTTC ACCCGCAACA TCCGCTGTTT
GAGGCCCTGA AACGCCACGA CTACCCGGCC TTCGCCGCCG AGCAACTGAA AGAGCGCGAG
CAGGCCGGTA TGCCTCCGTT CAGTTTTCAG GCGCTGGTGC GGGCGGAGGC GCGCACGCAA
GAGGTGGCGC AAGGTTTTTT GAGCGCGGCC AGTGCTGCCG CCACCCGGAT GGCACAAGCG
GACCAGTTGC TGGCGCACTT GACCCTGTAC CCGGCGGTGC CCATGAGCAT CCAGCGCGTG
GCCAATGTGG AGCGGGCGCA AATGCTGATC GAGAGCCCGT CACGCGCGGC GCTGCAACGC
TTTTTGGCGG CCTGGCAGGT GGTGTTGCAC GCGACCCGTA AACAGCCCGA GGGGCGCGGC
TTGCTGCGCT GGGCCATTGA CGTGGATCCT TTGGCTATTT GA
|
|---|
| Protein sequence | MTHQLAVLVH TPVHSAVAGT LSYVSELPLT VGSLVRVPLG QRELLGVVWD APLDSPAASF
DPQKLRPISS ALDGIAPLSA SWRQLVTFAA HYYQRSVGEV ALAALPPQLR DLSTQQWGRR
LKRHAKAGAV GEPALVDASE LVALSPEQTG AIAQFNTNSG PFLLFGATGS GKTEVYLQCV
EQLLVREPDA QAMVMVPEIN LTPQLEARFM ARFAPMYGDG AVVSMHSGMT PAQRLKSWLA
AHSGAARIVL GTRMAIFASL PKLKLIIVDE EHDPSYKSGE GARYSARDLA VYRGRLDGAK
VMLGSATPSL ESWHHSRPAA EGGRYLRLVM PSRIGSITAL PTAQGDTTRL VNDAAAASAG
LPVVRRVDMN HQPKHCVFSP PLLAAIMERI ARGEQSMVFL NRRGYAPVLH CADCDWKSEC
PHCSAYRVFH KIDRTLRCHH CGYAERVPRA CPACGNPDIA PMGRGTERLE EHLAELLLEV
RRPNSVSDQW PEGEPVRIVR IDADSTKLKG ELQAQLARVH SGEVDVLVGT QMIAKGHDFR
RITLVAAINP DNALFSSDFR APERLFSLLM QAAGRAGRDA DISGQSEMWV QTFHPQHPLF
EALKRHDYPA FAAEQLKERE QAGMPPFSFQ ALVRAEARTQ EVAQGFLSAA SAAATRMAQA
DQLLAHLTLY PAVPMSIQRV ANVERAQMLI ESPSRAALQR FLAAWQVVLH ATRKQPEGRG
LLRWAIDVDP LAI
|
|---|
| |