| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0793 |
|---|
| Symbol | |
|---|
| ID | 3964211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 830247 |
|---|
| End bp | 831962 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637915623 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_522074 |
|---|
| Protein GI | 89899603 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00997149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCAC CCACACGCGC TATGGCCATC GCCAGCATGG CACTGGCAGC AGGCCTGACC
TTTCCTGCGC CGGGCGCTAC GGTACAAGCC GGCAAAGCGA CGGCGGCGAA GCTGCCTGCG
CCTGCCACTG CGCCTGCGCG CCAGGCGCTC TCAACGACCG GACTATGCTC GCGCGTCAAC
ATTGCGCCCG CGGTGCTGAT TCCGGTGGGC AAGTCGACTG TTTTGCGACC GAGTTCGCCC
GTCACCCGCA TCCTGCTGGG CAATCCCGAA AACGCGCGTG CCGCGCGCCC GGCCGATACC
CCCGAGGGTA AAAAAGAGGA AGGGGTCAAG ACGCCGTCCG TCAACACGCG CCCCGGCGTC
GCCGATGTGG ATGTGCTGTT GCTCGCACCG ACCGAGGTTT ACCTGCTCGG CAAGACCATC
GGCACGACCA ATGTGGTGAT GCTTGACCGC GACGGCACCT GCACGGCCTT CGATGTCGTC
GTCGCCATGG ACACCATGGC ATTGCAGGCG GTGATCGGCC AACTGCTCCC GATCGAGAAA
GAGATCAAGG TCACATCGGC TTTCGATTCG ATCGTGCTGT CGGGCATGGT CTCCGACACT
GAAGCGTTGA CACGGGTGAC CGACCTCGCC AATGCCTACG TACGCGGCCA GGATGGCGGC
GGCCAAAGCA ACCAGCGCGT TGTCAATATG CTGGAGGTGG GCGCGCCGCA GCAGGTGATG
CTCGAAGTCA AGGTGGCCGA GATCTCAAAA TCCTTGCTGG ATCAGTTCGG CATCAACTTT
TCCCGTGCCT ACGTGCCGGG TGACGGTTCG ATGATGCGTT TTTTGTCGGG CATCTTCGGC
GGCGCTGTGG GTGCGATGGG CCAGATCAGC GGTACGGGCG CCAGCGGCGT GCCTTTCAGC
TCGGTCGACG CGGTGATAGG TGGCACGGTG CCAATTGCAG GCGCCAGCGG TGGCAACGTG
ACGGTGACCT ATGACGCCAC CACGGGTCGG CCCACCTACA CCACCAGCTA CGGCACCGTA
CCGGGCCGCG GCGTGTCCAA CGCGACGCTG AACATGCAAA AAAACGATGG TCTGGTCAAG
GTGCTGGCCG AGCCGACGAT CATGGCCATC AGCGGGCAGA CCGGCAGCTT TCTGGCGGGC
GGCAAGATAT TCATCCCGGT GTCGAAGGAC AATGGTAGCG GGGGGAGCAC CACCACGCTG
GAAGAAAAGG AGTTCGGCGT TTCGGTCAGG TTCACACCCA CCGTGCTCGG TAGCGGACGC
ATCAACCTGC GCGTGCGGCC TGAAGTGTCC GAACTCAACG TTGCGGGCGT TCAGATCAGC
AGCGGCGGCC TGAACGCGGT GCTGCCATCG TTCACCTCGC GCAAGGCCGA AACCACGGTG
CAACTGATGG ATGGCCAGAG CTTCGCCATC GGCGGCCTGA TCAAGAACAA CACCACGACC
AACATCAATG CCTTCCCGTT CCTGGGCGAG CTGCCGGTGG TCGGTGCGCT GTTTCGCAGC
ACCGAGTTTC AGACTGACCG CTCGGAACTG GTGTTCGTGA TCACGCCGCG TCTCGTGAAA
CCGCTGCCAG TGGGCTACCG GTTGCCCACC GACGGCTACG TGCCACCCAG CCGCAGCGAA
CTGATCCTGG GCGGCAAGCT GGAGGGCCAG CGCACCGATG ACGCGGCCAG CGGCGACAAC
CCCGCCCAAG GCGGCTTCGA CAAGGAGAAA AAATAA
|
|---|
| Protein sequence | MSSPTRAMAI ASMALAAGLT FPAPGATVQA GKATAAKLPA PATAPARQAL STTGLCSRVN
IAPAVLIPVG KSTVLRPSSP VTRILLGNPE NARAARPADT PEGKKEEGVK TPSVNTRPGV
ADVDVLLLAP TEVYLLGKTI GTTNVVMLDR DGTCTAFDVV VAMDTMALQA VIGQLLPIEK
EIKVTSAFDS IVLSGMVSDT EALTRVTDLA NAYVRGQDGG GQSNQRVVNM LEVGAPQQVM
LEVKVAEISK SLLDQFGINF SRAYVPGDGS MMRFLSGIFG GAVGAMGQIS GTGASGVPFS
SVDAVIGGTV PIAGASGGNV TVTYDATTGR PTYTTSYGTV PGRGVSNATL NMQKNDGLVK
VLAEPTIMAI SGQTGSFLAG GKIFIPVSKD NGSGGSTTTL EEKEFGVSVR FTPTVLGSGR
INLRVRPEVS ELNVAGVQIS SGGLNAVLPS FTSRKAETTV QLMDGQSFAI GGLIKNNTTT
NINAFPFLGE LPVVGALFRS TEFQTDRSEL VFVITPRLVK PLPVGYRLPT DGYVPPSRSE
LILGGKLEGQ RTDDAASGDN PAQGGFDKEK K
|
|---|
| |