| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0785 |
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| Symbol | |
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| ID | 3964203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 823326 |
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| End bp | 825605 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637915615 |
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| Product | putative spermidine synthase |
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| Protein accession | YP_522066 |
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| Protein GI | 89899595 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACGA CCACGGTCCC GCTGTCCCGC GAGCCGGCAA GCAGCGCATC AGTGCCGAAC
CGGCAGGTTC GTGTCCTGTG TGTTCTGTTC TTTTTCTCCG GCTTCCCGGC GCTCATTTAT
CAACTGGTAT GGCAACGCGC CTTATTCCGC ATCTTCGGTG TCAACATCGA ATCGGTGACG
ATCGTCGTCA CCGCATTCAT GCTCGGCCTG GGCCTGGGCG GCTTGGCCGG CGGCTGGTTG
TCGAAACGTC GAGGCATACC GCTACTGTTG TTGCTCGCGA CCATCGAAAC ATTGACCGGC
GTGTTCGGGC TGTTCTCTCT GTCGATATTC GAGCGAGTCG GCGACATCGT CCTCGGTGCG
CCATTGCCCC TGACTGCACT GGTGACCTTG GCTTTGGTCA TTGTGCCGAC GCTGTTGATG
GGCGCCACGC TGCCGCTGCT CGTTGGCCAC CTCGTGCGGC GTTCCGGCAA CGTCGGCGCC
TCGGTCGGCC AACTCTATTA CGTCAACACC CTGGGTGCGG GCGCTGCCTG CCTCGCCTGT
GCGGTCCTGT TGTTCCCGCT GCTCGGCATG CAGGGTTCGG TGCTGGTGGC CGTGGCATTC
AACGCGGCTG TCGCGCTGGG GGCCGTCGCT GCGCATACAG CCGATCGGCG CAATATGCCC
CACACCCTAA CCGACTCCAA TCCGACCCGA TCAACAGCCG CGTCTCGCAC CAGCCTCCCA
TTTGCGGTCG TGCTCGCGAT GTCGTGTGTG GGCGGTCTGG TGTCGCTGTC GTACGAGATC
TTCTTTTTCC GCGCAATGTC CTACGCCAGC GGGAGCAGTT CTTTCGCGTT TGCGACGACC
CTCGGTGCCT TTCTGGTCGG CCTGGCGTCT GGTGCCCGGC TCGGCGGCGA AGCTTGCAAC
GACGTGGACG GTGACGTGCT GTTGCACCGA ATGCTGCGCA GCCTGCTCGC GGCCAGTCTG
ATCGGGTTTG CGTTTCTACC CGTGCTCGGC CACCTCGCCT GGCTGGACCG CGCGATCCTC
GGCGTGGGCC TGTTGTTTGT GTACCTGTTG GCACGTCAAT GGGGCCTGGT ACTGCCCTGC
CTTGCCCACC TCGGCGTGGC CGCTGACGCG CAGGCCGGCA TGAGAACAGG GTTGCTTTAC
CTTGCGAACA TTCTCGGCGC CGCGACGGGT TCGGTGCTGA CCGGTTTTAT CTTGATGGAC
CACCTGAGCC TGGTCCAGGT GGGCCAACTG CTGGTCGCCG CAGCATTCGG ATGCGCGCTG
ATTCTTGGCC TGGCGATCAC GGCGTCTCGG GGTATCAAAT TCAGACGTTC GAGCGCCATC
GCAGTGGTCG CAGGCTTGGC CGTTCTGGCG CTGCCCGCAG CCAGCGAAAA AGTCCTGGAA
TCGCTTCAGT GGAAGGGCGC ACCCGAGAGC AAGACGCCAT TCGCGGCGGT TGTTGAGAAC
CGCAGCGGAA TCGTCACCGT TGATCGCACG GGCACAGTCT TCGGCAACGG CGCCTACGAC
GGGCACTTCA ACGTCGAACT GACCTACGAC GTAAACGGCA TCGTACGCCC GTACGCGCTC
AGCCTGTTTC ATGCCGCCCC GCGCGATGTG CTGATGATCG GCCTGGCTTC AGGCTCTTGG
GCGCAGGTAT TGACCAACAA CCCCGAGGTG GATTCGCTCA CGATTGTCGA GATCAATCCT
GGCTATGTCG GCCTGATCGC CGCCAACCCG AGTGTCAGGT CAGTGCTCAC CCATCCTAAA
GTCACGCTGG TGACGGACGA CGGCCGCCGC TGGCTGCGAA TGAATGCGCA TCGGCACTTT
GATGCGATTG TGGCCAACAC AACCTATCAC TTCCGTTCCA ATGCGACGAA CCTGCTGTCC
GTCGACTTCC TCACATTGGT CAAGGCGCAT CTGAACCCGG GTGGCATCCT GTTCTACAAC
ACGACGGACT CAAGTCGCGT TCAGCGCACA GGCTGTACAA GCTTCGCGCA CGGAGCACGT
TTCACGAACC ACCTGGTCCT GTCAATGACA CCTATCGACT GGAACTTTGC GCGCTGGCGC
CGCACGCTGG AGGCCTACCG CATTGATGGT CGACCGATGC TCAACCCGGC GCGCGCCGAG
CACGCGCAAG GTCTGGCGCG ACTAATGGCA CTGGAGAGCC AGACGCACCC CGATGGCGCG
CACGCAGCCG GCGAATGGAT CGAACACTGC GCGCAGGTTT TGGCGCGCAC GGCTGGCCAG
GACCTCGTCA CCGACGACAA CATGGGTACC GAATGGCGCC ACGTCTGGGA GAAACAATGA
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| Protein sequence | MNTTTVPLSR EPASSASVPN RQVRVLCVLF FFSGFPALIY QLVWQRALFR IFGVNIESVT
IVVTAFMLGL GLGGLAGGWL SKRRGIPLLL LLATIETLTG VFGLFSLSIF ERVGDIVLGA
PLPLTALVTL ALVIVPTLLM GATLPLLVGH LVRRSGNVGA SVGQLYYVNT LGAGAACLAC
AVLLFPLLGM QGSVLVAVAF NAAVALGAVA AHTADRRNMP HTLTDSNPTR STAASRTSLP
FAVVLAMSCV GGLVSLSYEI FFFRAMSYAS GSSSFAFATT LGAFLVGLAS GARLGGEACN
DVDGDVLLHR MLRSLLAASL IGFAFLPVLG HLAWLDRAIL GVGLLFVYLL ARQWGLVLPC
LAHLGVAADA QAGMRTGLLY LANILGAATG SVLTGFILMD HLSLVQVGQL LVAAAFGCAL
ILGLAITASR GIKFRRSSAI AVVAGLAVLA LPAASEKVLE SLQWKGAPES KTPFAAVVEN
RSGIVTVDRT GTVFGNGAYD GHFNVELTYD VNGIVRPYAL SLFHAAPRDV LMIGLASGSW
AQVLTNNPEV DSLTIVEINP GYVGLIAANP SVRSVLTHPK VTLVTDDGRR WLRMNAHRHF
DAIVANTTYH FRSNATNLLS VDFLTLVKAH LNPGGILFYN TTDSSRVQRT GCTSFAHGAR
FTNHLVLSMT PIDWNFARWR RTLEAYRIDG RPMLNPARAE HAQGLARLMA LESQTHPDGA
HAAGEWIEHC AQVLARTAGQ DLVTDDNMGT EWRHVWEKQ
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