| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0699 |
|---|
| Symbol | |
|---|
| ID | 3963941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 735024 |
|---|
| End bp | 736661 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637915530 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_521981 |
|---|
| Protein GI | 89899510 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain
[TIGR03098] acyl-CoA ligase (AMP-forming), exosortase system type 1 associated |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTTT CTCTAATTTC TATGACCGAA TCCACACTCC TACCCGAACT GATAACCCTC
GCGGCCCAGC GCACGCCGCA GGCGATTGCA CTGACCAGTG GCACCTCACA TTTAAGTTAC
GCAGAGCTCA GCACCAGCGT CAGCCAGTTT GCCGCTGGCT TGTTGGGCCT GGGACTGGAT
CGTGGTGAGC GGGTCGCCAT TTATCTTGAA AAACGTTTCG AAACTGTCAT CGCCAGTTTT
GGCGCACCAG CGGCCGGGGC GGTGTTTGTG CCGGTCAACC CGCTGCTGAA ACCGGAGCAG
GTGGCATTTA TTTTGCGCGA CTGCAATGTG CGCGTGCTGG TGACGTCGCC GGAGCGTCTG
GCCTTGATGA AGGAGATGCT GGCTGAGTGC CATGACCTGC GCCATGTGGT GGTGACCGAT
GCTGTGGTCC CTTCAACCCC AGTCGACTTC ACCCTGCCAG GCCCGTTGGC CTTGGTCTCC
TGGCGTGACT TGCTCAGCAG CCCGGCCCGG CCCGGGCACC GTGTGATTGA CGTCGACATG
GTGGCCATTC TTTACACCTC GGGCAGCACT GGCAGGCCTA AAGGCGTGGT GCTGTCGCAC
CGCAACATGG TGGCGGGTGC CAAGAGCGTG GCGTCGTACC TGGAGAACAG GCCCGAAGAC
GTGCTGCTGG CGGCGCTGCC TTTGTCGTTT GATGCGGGCT TCAGCCAGCT CACCACGGCG
TTTCACGCCG GTGCGCGCGT GGTGCTGCTC AATTACCTGA TGCCGCGCGA TGTGCTCAAG
GCGATGGAGC GGGAAAAAGT GACCGGGCTG ACTGCCGTGC CGCCGCTGTA CATCCAGCTG
GCGCAACTGG ATTGGCCTGC GGCCATCAAT GAGAATTTGC GCTATTTCGC CAACACCGGC
GGACGCATGC CACGTGAAAC ACTGAATCTG TTGCGCCAGC GCGTGCCCCA AGCCAAACCG
TTCTTGATGT ATGGACTGAC CGAAGCATTC CGTTCCACCT ACCTGCCGCC GGATGAGGTA
GACCGCCGCC CGGACTCGAT TGGCAAGGCC ATTCCGAATG CTGAAATTCT GGTGCTGCGT
GAAGACGGGT CTGCCTGCAG CCCGGAGGAG CCTGGCGAGC TGGTGCACCG CGGTGCGCTG
GTGGGCATGG GTTACTGGAA TGACACTGAA AAGACGGCGG AGCGCTACAA GTTGCTGGCC
TCTGACGCAC CCGGACGGCA ACCGGGCCTG CAGTTGCCTG AATACGCGGT TTTTTCGGGG
GACACGGTGC GCAAAGACGC CGAGGGTTTT TTGTATTTCA TTGGTCGACG CGATGAGATG
ATGAAAACAT CGGGTTACCG GGTGAGTCCC ACCGAGGTGG AAGAAATTTT GTACGCGACC
CAAATGGTGG GCGAGTGCGT GGCCTTCGGC GTCGATCACC CCAGCTTGGG CCAAGCTATA
CAAGTAATAG CTACTAATGC CGTAGGCACG GGGGCTAGAG GCCTCAATGA CCTGATGAGT
GAATGCCGTG CCCGCATGCC CGCCTACATG GTGCCGGCAG GCATCGAGAT CGTCGCCGGG
CCGCTGCCGC GCAATCCCAA TGGCAAGATC GACCGCAAAT TACTGGCAAC CGAGTGGCTT
GAGCGGCATG CCGCCTGA
|
|---|
| Protein sequence | MIFSLISMTE STLLPELITL AAQRTPQAIA LTSGTSHLSY AELSTSVSQF AAGLLGLGLD
RGERVAIYLE KRFETVIASF GAPAAGAVFV PVNPLLKPEQ VAFILRDCNV RVLVTSPERL
ALMKEMLAEC HDLRHVVVTD AVVPSTPVDF TLPGPLALVS WRDLLSSPAR PGHRVIDVDM
VAILYTSGST GRPKGVVLSH RNMVAGAKSV ASYLENRPED VLLAALPLSF DAGFSQLTTA
FHAGARVVLL NYLMPRDVLK AMEREKVTGL TAVPPLYIQL AQLDWPAAIN ENLRYFANTG
GRMPRETLNL LRQRVPQAKP FLMYGLTEAF RSTYLPPDEV DRRPDSIGKA IPNAEILVLR
EDGSACSPEE PGELVHRGAL VGMGYWNDTE KTAERYKLLA SDAPGRQPGL QLPEYAVFSG
DTVRKDAEGF LYFIGRRDEM MKTSGYRVSP TEVEEILYAT QMVGECVAFG VDHPSLGQAI
QVIATNAVGT GARGLNDLMS ECRARMPAYM VPAGIEIVAG PLPRNPNGKI DRKLLATEWL
ERHAA
|
|---|
| |