| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0683 |
|---|
| Symbol | |
|---|
| ID | 3963829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 717401 |
|---|
| End bp | 719149 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637915514 |
|---|
| Product | asparagine synthase |
|---|
| Protein accession | YP_521965 |
|---|
| Protein GI | 89899494 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0367] Asparagine synthase (glutamine-hydrolyzing) |
|---|
| TIGRFAM ID | [TIGR01536] asparagine synthase (glutamine-hydrolyzing) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTGC GCATAATCGA TAGACAACAC AAAGAACAGC GAATCTCGCT GACCACGATC
AACTGTCACC CTCAAATGGC TGCAACCGAT ATTTCATTTG CCTCCGGCTC CCCCAAATTC
GCAGATACAC GCTTGACCGA ATTGGCGCGG ACCGCCGGCG CCGTAGCGGC CTGGCGCGAG
GCAATTGCTA AAAATGGCCC TGACGCCGCT CTGGGGACTT CTGGCGAATT TGCCGTGGGG
CTACGTTTGC CCGATGGCGG CACCTTTCTG GCGGTGGACC GCTTTTCCAT CTGCACCCTG
TGCTACAGGG TGGACAACGG GCAACTGCGC TTTGCCGCGC GCGCCGATGA ATTGGCTGAC
GCCAGTGCCG AGATTGACCC GCAGGCGATT TTTGATTACC TTTACTTTCA CGTCATCCCG
TCGCCACGCA CGATCTACAA AGGCATTTAC AGGTTACCGC CGGCGCACTA TGCGCTGTTT
GAAAACGGCC AGCTCAAGGT CGCACCGTAT TGGGTGCCCA GCTTTGCAGA GCAACGCAGC
CCCTCGTTTG ACGCGCTCAA GGACGAGTTC AGGCAGCTGC TGCAGGACTC GGTCGCGACC
CAGCTCGACG GCAGCAAACC AGCCTGCTTT TTGAGCGGTG GCACCGACAG CTCCACGGTG
GCCGGCATGA TTGCCCTGGC CAGCGGCAGG GTGGCGGCCA CTTATTCGAT TGGCTTTGAC
GCGCAGGGCT ATGACGAGAT GGAATATGCC CGTCTCGCGT CCAGACACTT CAAGACCGAG
CACCATGAGT ACTATGTCAC GCCCGATGAC CTGGTGCGCA GCATCCCGGC GGTGGCAGCC
CATTACGACC AGCCCTTTGG CAATTCGTCT GCCCTGCCCG CCTACTACTG CGCCAGGATG
GCGCGTGAAG ACGGCGTGAC CAAGTTGCTG GCTGGCGATG GCGGCGATGA ACTGTTTGGC
GGCAACTCCC GCTATGCCAA GCAGCGGGTG TTTGGCTGGT ACAACCATGT TCCAGGCTTC
CTTCAAAGAG GTCTGATGGA ACCGCTGCTG GGCACCCGTG CCGCGGCGAC CTTCGCCCTG
ACCCGCAAGG CTGGCAGCTA CGTGGAGCAG GCTCGCGCGC CCATGCCCGA CCGACTGCAG
ATGTACAACC TGATCATGCG ACTGGGTGCC GACGACGTGC TAACGCCACA ACTCATGGCA
CAAATTGACA CCGTAGCGCC GCTGCAACTG GAGCGCGCGG TATGGCAGAT GCCACAGAAC
TGCAGCCATT TGAATAGAGA GCTGGCCTAT GACTGGCGCT TTACCCTCGC CGAGAGTGAC
TTGCCCAAAG TGCTGGGCGC TACCGGCTGT GCCGGGGTGG GCGTAGGTTT TCCTATGCTC
GACGAGCGGC TGCTGGCGTT TTCGCTCAGG CTGCCAACCG CGTACAAGCT CAAGGGCCTG
CAACTGCGCT GGTTCTTCAA GGAGGCGCTG CGCGGCTTTC TGCCCGACGA GATCATCACC
AAGAAGAAGC AGGGCTTCGG CTTGCCGTTT GGCGTATGGG CCAACACCGA CCCGGCCCTC
AAGGCGCTGG CTACCGACTC GCTGCACAGC TTGGCGCGCC GCGGCGTGGT GCGCGCCGAT
TTTGTCCAGA CCCTGCTGAC GCAACACCTG CCCGAGCACC CGGGCTACTT TGGCGAGATG
GTGTGGATCC TGATGATGCT GGAGCAGTGG CTTGCGACCA AGGCGCCGCA GTTCAGCCTT
GCCGATTGA
|
|---|
| Protein sequence | MQLRIIDRQH KEQRISLTTI NCHPQMAATD ISFASGSPKF ADTRLTELAR TAGAVAAWRE
AIAKNGPDAA LGTSGEFAVG LRLPDGGTFL AVDRFSICTL CYRVDNGQLR FAARADELAD
ASAEIDPQAI FDYLYFHVIP SPRTIYKGIY RLPPAHYALF ENGQLKVAPY WVPSFAEQRS
PSFDALKDEF RQLLQDSVAT QLDGSKPACF LSGGTDSSTV AGMIALASGR VAATYSIGFD
AQGYDEMEYA RLASRHFKTE HHEYYVTPDD LVRSIPAVAA HYDQPFGNSS ALPAYYCARM
AREDGVTKLL AGDGGDELFG GNSRYAKQRV FGWYNHVPGF LQRGLMEPLL GTRAAATFAL
TRKAGSYVEQ ARAPMPDRLQ MYNLIMRLGA DDVLTPQLMA QIDTVAPLQL ERAVWQMPQN
CSHLNRELAY DWRFTLAESD LPKVLGATGC AGVGVGFPML DERLLAFSLR LPTAYKLKGL
QLRWFFKEAL RGFLPDEIIT KKKQGFGLPF GVWANTDPAL KALATDSLHS LARRGVVRAD
FVQTLLTQHL PEHPGYFGEM VWILMMLEQW LATKAPQFSL AD
|
|---|
| |