| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0590 |
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| Symbol | alaS |
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| ID | 3960108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 612882 |
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| End bp | 615512 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637915420 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_521872 |
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| Protein GI | 89899401 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCAA CCGTCGCCCC CGCCTCCGTC GCCGACATCC GCAAGATCTT TCTCGACTTC
TTTGCCTCCA AAGGCCATAC CGTGGTGCCG TCGAGCCCGC TGGTGCCCGG CAATGACCCG
ACGCTAATGT TCACCAACTC GGGCATGGTG CAGTTCAAGG ATGTGTTCCT GGGCACCGAC
AAGCGTTCTT ATGTGCGTGC CGCCTCGGTG CAGGCCTGCC TGCGCGCCGG GGGCAAACAC
AACGACCTGG AAAACGTCGG TTACACCGCA CGCCACCACA CTTTTTTCGA GATGCTGGGC
AACTGGAGCT TTGGCGACTA CTTCAAGCGC GACTCGCTCA AATGGGGCTG GGAACTGCTC
ACAAAAGTGT ACAAACTGCC CGCTGACAAG CTCTGGGCCA CGGTTTATAT CGACGACGAC
GAGGCTTACA ACATCTGGAC GCAAGAAATT GGCCTGCCGC CCGAGCGCGT GGTGCGCATT
GGCGACAACA AGGGCGCCAA ATACGCCTCC GACAACTTCT GGATGATGGC CGACACCGGC
CCGTGCGGCC CCTGCAGCGA GATTTTTTAT GACCACGGCC CCGCCATTGC CGGCGGCCCC
CCGGGCAGCC CGGAGCAGGA CGGTGACCGC TACATCGAAA TCTGGAACCA CGTGTTCATG
CAGTACGACA TGCAGCCGGA CGGCTCGGTC AAGCCGCTGC CCGCGCCGTG TGTCGACACC
GGCATGGGGC TGGAGCGCCT GGCCGCCATC CTGCAGCATG TGCACAGCAA TTACGAGATC
GATATTTTCG ACGCGCTGAT CAAGGCCGCG GCCCGTGAGA CCGGCTGCAC CGACCTGGGC
AACAAGAGCC TGCGCGTGAT TGCCGACCAC ATCCGCGCCA CCGCCTTTCT GGTCAGCGAC
GGCGTGCTGC CCAGCAACGA AGGGCGGGGT TATGTGCAGC GCCGCATCAT CCGCCGCGCC
ATCCGGCACG GCTACAAGCT GGGCCAGAAG GCGCCGTTTT TCTACAAGCT GGTGCCGGAC
CTGGTGACCC TGATGGGCGA GGCCTATCCG GGTCTGGCGA CGCAAGCCGA GCGTATTGCG
CAGGTGCTGC AAGCGGAAGA GGAGCGCTTT TTTGAAACGC TGGCCAACGG CATGCAAATA
CTCGATGAGA CGCTGACAGG CGATGCCAAG GTACTGCCGG GCGATGTCGC GTTCAAGCTG
CACGACACCT TTGGTTTCCC GCTCGACTTG TCCGCCGACG TGTGCCGCGA GCGCGGTGTC
GAGGTGGATG AGGCCGGCTT TCATGCCGCG ATGGAAAAAC AAAAAGCCCA AGGCCGCGCC
GCCGGCAAGT TCCGCATGGA CCGCGCACTG GAGTACAGCG GCGACGGCAA TGACTTTGTC
GGCTATGAGC GTCTCACGGA AGTTACAAAA ATAGTAGCAC TCTATGCAGA CAGCACGCCG
GTCAGCGAGC TGAAAGCAGG TCAGGCCGGG GTGGTGGTGC TGGCCGCCAC GCCGTTTTAT
GGCGAGAGCG GTGGTCAGGT CGGCGACCAG GGCGCGATCT TTTCTGACGG CGCGATGTTT
GACGTGGCCG ACACGCAAAA AATCAAGGCC GATGTATTTG GCCACCATGG TGTGCTGAAA
TCCGGCGCAC TCAAGATCGG CGACGTGGTC ACGGCCCATG TCAACGCCAG CCTGCGCGCC
GCCACCCAGC GCAACCACAG CGCCACCCAC CTGATGCACA AGGCGCTGCG CGAGGTGCTG
GGCGCACATG TGCAGCAAAA GGGCTCGCTG GTTAATGCAG AGCGCACCCG CTTTGACTTT
GCCCACAACG CGCCGGTCAC GGACGAGCAG ATTCGCGAGG TGGAAGCCCG CGTCAACTCT
GAGATCCTGT CCAACGCGGC AACCCAGTCG CGCGTGATGG ACATTGATGC GGCCCAGGAA
ACCGGCGCCA TGATGCTGTT TGGCGAGAAA TACGGTGAGT CGGTGCGTGT ACTCGACATC
GGCGCCAGCC GCGAACTGTG CGGCGGCACC CATGTTGCCC GCACCGGCGA CATTGGCCTG
TTCAAGGTGG TGGCGGAAAG CGGCGTGGCC TCCGGCGTGC GCCGCATCGA GGCCGTCACC
GGTCAGAATG CACTGAGCTA TCTGCAGGAT CTGGAAGACA CCGTGACCCA GGTGGCGGGC
ACCCTCAAAG CGCCCGTGGT GGAGATCAAC GAGCGTGTTG CCGGCGTGCT CGATCACCTC
AAGTCGCTGG AAAAAGAGAT CGCCGCCCTC AAGGGCAAAC TGGCCTCCGC CCAGGGCGAC
GAACTGGTTA CGCAGGCGGT GGATGTAAAG GGTATCAAGG TGCTGGTGGC CATGCTCGAA
GGCGCCGACA CCAAGACCCT GCGCGACACC ATGGACAAGC TCAAAGACAA ACTCAAAAGC
GCCGTGATCG TGCTGGCGGC GGTTGAGGGC GACAAGGTGC AAATCGCCGC TGGCGTCACG
TCGAACAGCG TGGGCAAAGT CAAGGCCGGT GAACTGGTCA ACTTTGTGGC GAGCCAGGTG
GGCGGTAAAG GTGGCGGCAA GCCCGACATG GCCATGGCCG GTGGCACCGA ACCGGCCAAA
CTGCCAGCCG CCTTGGCCAG CGTGATGGCC TGGGTTTCGG CCAAGCTTTG A
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| Protein sequence | MNSTVAPASV ADIRKIFLDF FASKGHTVVP SSPLVPGNDP TLMFTNSGMV QFKDVFLGTD
KRSYVRAASV QACLRAGGKH NDLENVGYTA RHHTFFEMLG NWSFGDYFKR DSLKWGWELL
TKVYKLPADK LWATVYIDDD EAYNIWTQEI GLPPERVVRI GDNKGAKYAS DNFWMMADTG
PCGPCSEIFY DHGPAIAGGP PGSPEQDGDR YIEIWNHVFM QYDMQPDGSV KPLPAPCVDT
GMGLERLAAI LQHVHSNYEI DIFDALIKAA ARETGCTDLG NKSLRVIADH IRATAFLVSD
GVLPSNEGRG YVQRRIIRRA IRHGYKLGQK APFFYKLVPD LVTLMGEAYP GLATQAERIA
QVLQAEEERF FETLANGMQI LDETLTGDAK VLPGDVAFKL HDTFGFPLDL SADVCRERGV
EVDEAGFHAA MEKQKAQGRA AGKFRMDRAL EYSGDGNDFV GYERLTEVTK IVALYADSTP
VSELKAGQAG VVVLAATPFY GESGGQVGDQ GAIFSDGAMF DVADTQKIKA DVFGHHGVLK
SGALKIGDVV TAHVNASLRA ATQRNHSATH LMHKALREVL GAHVQQKGSL VNAERTRFDF
AHNAPVTDEQ IREVEARVNS EILSNAATQS RVMDIDAAQE TGAMMLFGEK YGESVRVLDI
GASRELCGGT HVARTGDIGL FKVVAESGVA SGVRRIEAVT GQNALSYLQD LEDTVTQVAG
TLKAPVVEIN ERVAGVLDHL KSLEKEIAAL KGKLASAQGD ELVTQAVDVK GIKVLVAMLE
GADTKTLRDT MDKLKDKLKS AVIVLAAVEG DKVQIAAGVT SNSVGKVKAG ELVNFVASQV
GGKGGGKPDM AMAGGTEPAK LPAALASVMA WVSAKL
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