| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0537 |
|---|
| Symbol | |
|---|
| ID | 3963876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 559976 |
|---|
| End bp | 560656 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637915367 |
|---|
| Product | methylation |
|---|
| Protein accession | YP_521819 |
|---|
| Protein GI | 89899348 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCACC CGGGCTTGCC GCGGCTTCGA GTCAAAGGCT TCACGCTGAT TGAGCTGCTG
GTGGCGATCA GCCTGATGGC GCTGATGGCG GCCCTGAGCT GGCGCGGGCT CGACGGCATG
ACGCGAGCGC AGACGCAAAT GCGCCGGCAT TCAGACGATG TGCTCACCTT GCAGGCGGGC
CTGGCGCAGT GGGGCGCTGA CCTGGACGCG CTGGCCACTC AACCCAATAC CCCGAGCCTG
GACTGGGACG GGCGCGCCCT GCGCCTCCTG CGCGCCAGCA CCGCGATGCC CGGCGAGGGG
CTGCGGGTGG TGGCTTGGTC CCGGCGCACG ATCGACGGGG CCGGTCAGTG GCTGCGCTGG
CAGTCGCCGC CCTTGACCAC GCGCGCTCAA TTGCAACTGG CCTGGCAGCA GGCCGCCTTG
TGGGGGCAGA ACCCGAGCGA CGAAGCCAGA ACCCGAGAGG TGCGGGTGGC GGCGCTCGAT
CAGTGGCAAA TCTTTTATTT TCGGGACAAC GCGTGGAGCA ACCCGCTGTC CAGCGCCGGT
GCCTCCGGCG CGGCCCAGGC GGCAACGGCG GCATTGATCC CCGATGGCGT GCGGCTGGAG
CTGACGCTGT CGGCCGGCCA AGCCATCAGT GGCCGCGTGA CGCGCGATTG GGTCCGTCCC
ACGCTGGGGA GCGGCAAATG A
|
|---|
| Protein sequence | MTHPGLPRLR VKGFTLIELL VAISLMALMA ALSWRGLDGM TRAQTQMRRH SDDVLTLQAG
LAQWGADLDA LATQPNTPSL DWDGRALRLL RASTAMPGEG LRVVAWSRRT IDGAGQWLRW
QSPPLTTRAQ LQLAWQQAAL WGQNPSDEAR TREVRVAALD QWQIFYFRDN AWSNPLSSAG
ASGAAQAATA ALIPDGVRLE LTLSAGQAIS GRVTRDWVRP TLGSGK
|
|---|
| |