Gene Rfer_0530 details

Gene Information

• Locus tag: Rfer_0530
• ID: 3963869
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 554822
• End bp: 556876
• Gene Length: 2055 bp
• Protein Length: 684 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637915360
• Product: putative site-specific recombinase transmembrane protein
• Protein accession: YP_521812
• Protein GI: 89899341
• COG category: [L] Replication, recombination and repair
• COG ID: [COG4389] Site-specific recombinase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCAAA AACTTGACCT GGCTGAACTG CTCGATGCCC TGGACCCGCA AGCCCATCTG 
GCGCACCGCC ACCTGTGGCT GATTGACTTG CTGCGCTGGG TCCGTGGTGG CCGCGATTCA 
GTGCCGCACG CGGTGGCACG TATGACGCTG CTGCTCGACA CGCTGCAACA GCGCCCGGAT 
GCGCGTGCCA AGCTGCAGGC CTGGTGGCGG GTGCTGCTTT CCACCGTGGA TGCGACGGCC 
TTGCTGGCCG ACTACGGGTT TTCGTCCCGC AGCGCTTTTG CCAGCGAGCT GGCCGAGCGC 
CTGCGCCTCA AATGGTTGCC AGGAACCCCC GAAACTGTCG ATGCCTCGGC CCTGTTTTCA 
CTGGTGTTGT GTGATGCGTT TGATGCCCAA TGGATCAGCG CCCTGGACGA CGCCACCTTG 
ATGCGGCTGT CTGAGTTACT GCAACTCTCG TGTCTGGATG CCGGCAACGA CAACTGTGCC 
TGGGTGCCCC AGGTCAAGCA AGGCAGCGTC TCGCCCTGGC AGGCGACACT GCTTGAGGCG 
CTGACCTTTT GCACCAGCCA GATTCGCGCC ACCGGTTTTT CACCGGAACT GCGTTTGCGC 
ATGAGTGCCC CGGCGCTGGA AACGGCCCCC TTTCACGCCC TGGACGGCGA CATCATGGCG 
CTGCAAGTCG CCTTTCTGGC CAGCCCGCAC GTCAACTCCG CCGAACGCCA GGACGCGCTG 
CAGCGGTACC TGAGCCGCCT GGAGGCTTGC CGTCAGGCGG CTGCGTCGGT TTACACCCAT 
CTGGATGCCA ACGGCATTTC CGTCAACCTG GTGTTCCAGT TGCGTCAACT GCGTGAACGG 
GTGCTGCGCG TTCGCGCCCT GCTCGATTGC CTGCTGGCGG CCAACCCGCA GGCCAGCACC 
GCGCGTCTGC TGGCGCATCT GGTCCTGGTG GGGCAAGCGC GGCGCAGTCT GCGCGCCCTG 
ATTGCCTCCA ACTCATCGAT GCTGGCCGCC AAAGTGGCCG AGCGCAGCTC CGAGACCGGC 
GAGCACTACA TTACCCGCAC CCGGGCCGAA TACGGCGCCA TGCTGCGCGA TGCAGCGGGT 
GGCGGCGCCG TGATGTCGCT CACCACGCTG TTCAAGTTCA TGGTGCTGTC GCTCGGCTTG 
TCGGCTTTCT GGAGCGGGTT TTATGCCGGC CTGAACTATG CCCTGAGTTT TGTGCTGATC 
CAGTTGCTGC ACTGGACCGT CGCCACCAAA CAGCCAGCCA TGACGGCCCC AGCCATGGCC 
GCCAAACTCA AGGACCTCGA CGAACCCGGG GCGATTGACC TGTTTGTCGA TGAAGTCACC 
CATCTGGTGC GCTCGCAGGT AGCAGCCGTG GTGGGCAACC TGGCGTTGGT GGCGCCGTGT 
GTCGTGCTGA TCAGCGCGGC GCTCTGGTTC ACTCTGGGAA AGCCGATGAT TGACGTGAAG 
GAGGCCGAGC ACGTGCTGCA CACGCTCCAC GTGTTCGGCC CGACAGCGCT GTTTGCCGCG 
CTGACGGGTG TGCTGCTGTT TGCGTCGAGC ATCATCGCAG GTTGGGTCGA GAACTGGTTT 
GTGCTGCACC GGCTGGACTC GGCGCTGCGC TACAACCCCA AGATCACTGC AGCTCTGGGA 
ATTGCGCGTG CCGGGCGTTG GGCGCAGTTC ATGCGCGACA ACATCTCAGG TCTGGCGGCC 
AATGTGTCGC TCGGGTTGAT GCTGGGTTTG GTCCCGGCTT TTGCCGCGTT CTTCGGACTG 
GGGCTGGAAG TGCGGCACGT GACACTGTCC ACCGGCCAAC TGGCCGCGGC AGCCGCTAGC 
CTCGGCCTGG CGGTACTCCA GCAATCGGCT TTCTGGTGGT GCGTGGTCGG CATTGTGGTC 
ACCGCTGTGC TCAACGTGGG GGTCAGTTTT TACTTTGCGT TCCGGCTTGC TTTGCGCGCC 
CACAACATCG GTGGCATCGA CCGCTCCCGT ATTCGCACCG CCATTCGCGC GCGCTGGCGC 
CATGCGCCGC TGAGCTTCTT TTTGCCGGCA AAGGAAACAA TCCCCACGCC GCCAGCAAAC 
GATAAGGTTG ACTAG 

 

Protein sequence

MTQKLDLAEL LDALDPQAHL AHRHLWLIDL LRWVRGGRDS VPHAVARMTL LLDTLQQRPD 
ARAKLQAWWR VLLSTVDATA LLADYGFSSR SAFASELAER LRLKWLPGTP ETVDASALFS 
LVLCDAFDAQ WISALDDATL MRLSELLQLS CLDAGNDNCA WVPQVKQGSV SPWQATLLEA 
LTFCTSQIRA TGFSPELRLR MSAPALETAP FHALDGDIMA LQVAFLASPH VNSAERQDAL 
QRYLSRLEAC RQAAASVYTH LDANGISVNL VFQLRQLRER VLRVRALLDC LLAANPQAST 
ARLLAHLVLV GQARRSLRAL IASNSSMLAA KVAERSSETG EHYITRTRAE YGAMLRDAAG 
GGAVMSLTTL FKFMVLSLGL SAFWSGFYAG LNYALSFVLI QLLHWTVATK QPAMTAPAMA 
AKLKDLDEPG AIDLFVDEVT HLVRSQVAAV VGNLALVAPC VVLISAALWF TLGKPMIDVK 
EAEHVLHTLH VFGPTALFAA LTGVLLFASS IIAGWVENWF VLHRLDSALR YNPKITAALG 
IARAGRWAQF MRDNISGLAA NVSLGLMLGL VPAFAAFFGL GLEVRHVTLS TGQLAAAAAS 
LGLAVLQQSA FWWCVVGIVV TAVLNVGVSF YFAFRLALRA HNIGGIDRSR IRTAIRARWR 
HAPLSFFLPA KETIPTPPAN DKVD