Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_0527 |
Symbol | |
ID | 3963866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 551325 |
End bp | 552383 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637915357 |
Product | porin |
Protein accession | YP_521809 |
Protein GI | 89899338 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0023989 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTCCACT GCCAGCTGCG CGCCGTGCTC GCAGCCTCCG GCGCCTCGTT CGCTCAGTCC AGCGTGACGC TTTATGGCAT TGCTGATGTT TACTTGGGCA ACACGAAATT GACCGGGCAC GATGGCGTCA GCACAACGAC CAATTCCCTT GGCAGCGGTG GTGTCAGCAC CGATCGTTGG GGTTTTAAAG GGTCTGAAGA TTTGGGCGGT GGCCTGAAAG CCAATTTCTT GCTGGAGCAA GGTTTTAACA TTGACACGGG CGCAGCCAAG GGCACGGGCA ACAATGCGGC TGGTTTGCCC GTAGCCGGTG CGCAAGGCTT TGCCCGCCAG TCCTACGTTG GTTTCTCGGG TGGCTTCGGT GAAGTCAAAT TGGGCAAGAT GTGGACTGCT TTTGATGATG TCAATGGTGC CACTGATGCG GTTTTTGACT CGGCCCTGTC GCCGATGTAC TACGTCTTTA CCAGCACCAA CTACAACGCC AACCCCGGCA ACTCTGTTTA CTACACAACC CCGACCTTCA GCGGCTTTAG CGGCACAGTC AGCTATGGCT TGGGCGAAAA CAAGACGGCT GCTCAAAATG CTGGTTCCAA CGCAGCCTTC AATGTGCAGT ACACAGGCGG TCCGGTGTAC GTGGCTTTGG GCTATCAATC CGAGAAAGAC AATGGCAATG TGAGCTCGCG TGACTTTACC CGCGTCAATG CTTCTTATGA TTTGGGCGTT GTCAAGCTCA TGGGCAACCT TGGCCGCACC AAAGCGAACG ACAAGTCCAC CAACGAATGG CAACTGGGCG TTGATTACCC TGTGGGCAGC GCTTTGACGC TGTCTGCCAG CTACGCAGCT TCCAAAGGTG GGGTCCTGAC TACTTTTGCG CCGACTGCAG CAGGTACAGC TGATGTCAAG CGCACGGGCT TTGGCATCGG TGCTTCTTAC TCCCTGTCCA AGCGTACGTC CTTGTATGGT GGTTACATGG CTGCCAAGGA AGAAGCCAAC GCCAACTTTG TCGGCACTGC TGATGCCGAA ACCAAGCTGT TTGCTGTTGG TCTTCGCCAC GCATTCTGA
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Protein sequence | MVHCQLRAVL AASGASFAQS SVTLYGIADV YLGNTKLTGH DGVSTTTNSL GSGGVSTDRW GFKGSEDLGG GLKANFLLEQ GFNIDTGAAK GTGNNAAGLP VAGAQGFARQ SYVGFSGGFG EVKLGKMWTA FDDVNGATDA VFDSALSPMY YVFTSTNYNA NPGNSVYYTT PTFSGFSGTV SYGLGENKTA AQNAGSNAAF NVQYTGGPVY VALGYQSEKD NGNVSSRDFT RVNASYDLGV VKLMGNLGRT KANDKSTNEW QLGVDYPVGS ALTLSASYAA SKGGVLTTFA PTAAGTADVK RTGFGIGASY SLSKRTSLYG GYMAAKEEAN ANFVGTADAE TKLFAVGLRH AF
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