Gene Rfer_0527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_0527 
Symbol 
ID3963866 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp551325 
End bp552383 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content56% 
IMG OID637915357 
Productporin 
Protein accessionYP_521809 
Protein GI89899338 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0023989 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCCACT GCCAGCTGCG CGCCGTGCTC GCAGCCTCCG GCGCCTCGTT CGCTCAGTCC 
AGCGTGACGC TTTATGGCAT TGCTGATGTT TACTTGGGCA ACACGAAATT GACCGGGCAC
GATGGCGTCA GCACAACGAC CAATTCCCTT GGCAGCGGTG GTGTCAGCAC CGATCGTTGG
GGTTTTAAAG GGTCTGAAGA TTTGGGCGGT GGCCTGAAAG CCAATTTCTT GCTGGAGCAA
GGTTTTAACA TTGACACGGG CGCAGCCAAG GGCACGGGCA ACAATGCGGC TGGTTTGCCC
GTAGCCGGTG CGCAAGGCTT TGCCCGCCAG TCCTACGTTG GTTTCTCGGG TGGCTTCGGT
GAAGTCAAAT TGGGCAAGAT GTGGACTGCT TTTGATGATG TCAATGGTGC CACTGATGCG
GTTTTTGACT CGGCCCTGTC GCCGATGTAC TACGTCTTTA CCAGCACCAA CTACAACGCC
AACCCCGGCA ACTCTGTTTA CTACACAACC CCGACCTTCA GCGGCTTTAG CGGCACAGTC
AGCTATGGCT TGGGCGAAAA CAAGACGGCT GCTCAAAATG CTGGTTCCAA CGCAGCCTTC
AATGTGCAGT ACACAGGCGG TCCGGTGTAC GTGGCTTTGG GCTATCAATC CGAGAAAGAC
AATGGCAATG TGAGCTCGCG TGACTTTACC CGCGTCAATG CTTCTTATGA TTTGGGCGTT
GTCAAGCTCA TGGGCAACCT TGGCCGCACC AAAGCGAACG ACAAGTCCAC CAACGAATGG
CAACTGGGCG TTGATTACCC TGTGGGCAGC GCTTTGACGC TGTCTGCCAG CTACGCAGCT
TCCAAAGGTG GGGTCCTGAC TACTTTTGCG CCGACTGCAG CAGGTACAGC TGATGTCAAG
CGCACGGGCT TTGGCATCGG TGCTTCTTAC TCCCTGTCCA AGCGTACGTC CTTGTATGGT
GGTTACATGG CTGCCAAGGA AGAAGCCAAC GCCAACTTTG TCGGCACTGC TGATGCCGAA
ACCAAGCTGT TTGCTGTTGG TCTTCGCCAC GCATTCTGA
 
Protein sequence
MVHCQLRAVL AASGASFAQS SVTLYGIADV YLGNTKLTGH DGVSTTTNSL GSGGVSTDRW 
GFKGSEDLGG GLKANFLLEQ GFNIDTGAAK GTGNNAAGLP VAGAQGFARQ SYVGFSGGFG
EVKLGKMWTA FDDVNGATDA VFDSALSPMY YVFTSTNYNA NPGNSVYYTT PTFSGFSGTV
SYGLGENKTA AQNAGSNAAF NVQYTGGPVY VALGYQSEKD NGNVSSRDFT RVNASYDLGV
VKLMGNLGRT KANDKSTNEW QLGVDYPVGS ALTLSASYAA SKGGVLTTFA PTAAGTADVK
RTGFGIGASY SLSKRTSLYG GYMAAKEEAN ANFVGTADAE TKLFAVGLRH AF