| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0453 |
|---|
| Symbol | |
|---|
| ID | 3963420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 459314 |
|---|
| End bp | 460243 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637915284 |
|---|
| Product | dihydrodipicolinate synthetase |
|---|
| Protein accession | YP_521736 |
|---|
| Protein GI | 89899265 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAA CAAACCAGGC CCGCTTCAAG GGCGTCTTCC CGGTAGTCCC GACCACGTTT
TTTGAGAATG GCGAGCTCGA TCTTGCCAGC CAGAAGCGTT GCGTCGATTT CATGATCGAT
GCCGGCTCCA ACGGCCTGTG CCTGCTGGCC AACTTCTCGG AGCAGTTTTT GCTCTCGGAT
GACGAGCGAG ACGTGCTGAC CCGAACCATG CTGGAGCATG TGGCCGGTCG AGTGCCGGTG
ATTGTGACCA CCACCCACTT CAGCACCCAG GTCTGCGCTC AGCGCAGCCG GCGCGCCGAG
GATTTGGGCG CTGCCATGGT GATGGTGATG CCGCCCTACC ACGGCGCCAC CTTTCGCGTC
TCCGAAGAGA GAATTTACGA GTTTTATGCC GGGCTGTCGG ATGCGATTGA CATTCCCATC
ATGATCCAGG ACGCGCCCGC CAGTGGCACT GTTCTGTCGG CCGCCTTTCT GGCCCGCATG
GCCACGGAGA TCAAGCAGGT GGCCTATTTC AAGATCGAAA CCGCCGGTGC CGCCTCCAAG
CTGCGCGAAC TGATCCGCCT GGGCGGGGCT GCCATCGAGG GCCCATGGGA TGGCGAAGAA
GCCATCACCC TGCTACCCGA TCTGGACGCG GGCGCGACCG GGGCGATGAC CGGCGGCGCT
TACCCCGACG GCATTCGCCT GATTGTGGAC GCCTATTGCG CCGGTCGGCG TGAAGAAGCC
ATCGCCCATT ACCAGCAATG GCTGCCCCTG ATCAACTATG AAAACCGCCA GGGCGGCATC
CTGAGCGCCA AGGCGCTGAT GAAGGAAGGC GGCGTCATTG CCTGCGAAGC ACCGCGCCAT
CCCTGGCCCT CCATGCACCC CGCGGTTCGC GCGGGCCTGA TCGAGACCGC ACAGCGCCTG
AATCCGATGG TGCTGCGCTG GGGCAAATAA
|
|---|
| Protein sequence | MTQTNQARFK GVFPVVPTTF FENGELDLAS QKRCVDFMID AGSNGLCLLA NFSEQFLLSD
DERDVLTRTM LEHVAGRVPV IVTTTHFSTQ VCAQRSRRAE DLGAAMVMVM PPYHGATFRV
SEERIYEFYA GLSDAIDIPI MIQDAPASGT VLSAAFLARM ATEIKQVAYF KIETAGAASK
LRELIRLGGA AIEGPWDGEE AITLLPDLDA GATGAMTGGA YPDGIRLIVD AYCAGRREEA
IAHYQQWLPL INYENRQGGI LSAKALMKEG GVIACEAPRH PWPSMHPAVR AGLIETAQRL
NPMVLRWGK
|
|---|
| |