| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0412 |
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| Symbol | |
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| ID | 3962786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 421066 |
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| End bp | 422679 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637915245 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_521697 |
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| Protein GI | 89899226 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACAAG GCACAGGGAT CGCGGTTGCC GTCATGGCCG CGGTGATTGC TGCGGGCGCT
GGCTACTGGC TAGGCCACAA AGGCCCGGCG TCCCAAGCTC AGGGAACCGT GTCAGCGACG
GCCGCCGCCG TTGACACCGG CGCTGGCAGC ACTTCGAGAA AACTGCTGTA CTACCGCAAC
CCCATGGGCT TGCCCGACAC CTCTCCCACG CCGAAAAAAG ACCCGATGGG CATGGACTAC
ATCGCCGTCT ATGCCGGTGG GGCGGACGAA GAACCAGCCG CTGCCAATCA GGTCAGGATC
AGCACCGAGA AAGTGCAAAA GCTCGGCGTT CGCGTGGAAG CCGCGCAACT GCGTGCGCTC
GACAAATCCG TGCGAGCGTC GGGCCGCATT GAGCCCGACG AGCGGCGTGT GTATGCCATC
TCACCCAAGT TTGAGGGCTA TGTGGAGCGC TTGCATGTCA ACGTCACGGG CCAGGCGGTT
GGCAAAGGCC AGCCGCTGTT TGAGGTCTAT AGCCCGGAGC TGGTCTCGGC CCAGCGCGAA
TATGCAATTG CGGCGCAGGG CGTGGCCACG CTCAAGGATG CGGGCGGCCA GGCGCAGTCG
GGCATGCAGC AACTGGCCGG CGCCAGCTTG CAGCGGCTGC GCAACTGGGA TATTTCAGAA
GCGCAGATCA AGGCGCTGAC GCAGTCCGGT GCGACCACCC GCACGCTCAC CTTTCGCTCG
CCCGTCAGCG GTATCGTGAT GGAAAAAAAG GCCGTGCAAG GCATGCGTTT CATGCCCGGC
GAGGCGCTCT ATCAGATCGC AGACTTGTCG ACGGTGTGGG TCATTGCCGA CGTGTTTGAG
CAGGACATTG GTCTGGTCAA AAACGGCGCC AAGGCCACGG TAAGCATCAA CGCCTACCCG
GACAAGGCGT TTGCGGGCCG GGTCACTTAT GTTTATCCCA CCCTCAAGGC CGAGACGCGA
ACGGTGGCCG TGCGCGTGGA ACTCGCCAAC CCCGGTCTGT TGCTCAAACC CGGCATGTTT
GCCCAGGTTG AATTGCCGGT AACGGCCAAA GGCCAGGTCA TCACGGTGCC GGTGTCGGCT
GTGATTGACA GTGGCACCCG CCAGATTGTC TTGATCCAGC AAGCGCCCGG TCGTTTTGAA
CCGCGTGAAG TCAAGCTGGG TGCACGCAGC GACACCCATG TGGAAGTGCG TGAGGGCGTC
AAGGAAGGCG AGCAAGTGGT GGTGGCTGCC AACTTCTTGA TTGATGCCGA GAGCAACCTC
AAGGCCGCGC TAGGTGGCCT TGGCAGCGCT GCTCCAGCAC CGGCTACAGC AGCCAGCGCC
ACAGCAGTGG CTGCGCCGGC CACGCAGGCG GCAGCACCCG CCAAGGCCGT GGGCCACCAG
GCGACAGGCA CGGTGGACGG CGTTGATTTG AAGGCGGGCA CGGTCTCCTT GAGCCACGGC
CCCATCGCCA GCCTCAAATG GCCCGCCATG ACGATGGAGT TCAAGACCGC CAACGCCGCG
CTGCTGCAAG CGCTCAAACC CGGCGCCAAA GTCACGGTCG AGTTTATTGA GCGCCAACCC
GGCGAATGGG TCATCACCAG CGCCAAGCCG GCTGACCCGC ACGCCGGTCA GTGA
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| Protein sequence | MKQGTGIAVA VMAAVIAAGA GYWLGHKGPA SQAQGTVSAT AAAVDTGAGS TSRKLLYYRN
PMGLPDTSPT PKKDPMGMDY IAVYAGGADE EPAAANQVRI STEKVQKLGV RVEAAQLRAL
DKSVRASGRI EPDERRVYAI SPKFEGYVER LHVNVTGQAV GKGQPLFEVY SPELVSAQRE
YAIAAQGVAT LKDAGGQAQS GMQQLAGASL QRLRNWDISE AQIKALTQSG ATTRTLTFRS
PVSGIVMEKK AVQGMRFMPG EALYQIADLS TVWVIADVFE QDIGLVKNGA KATVSINAYP
DKAFAGRVTY VYPTLKAETR TVAVRVELAN PGLLLKPGMF AQVELPVTAK GQVITVPVSA
VIDSGTRQIV LIQQAPGRFE PREVKLGARS DTHVEVREGV KEGEQVVVAA NFLIDAESNL
KAALGGLGSA APAPATAASA TAVAAPATQA AAPAKAVGHQ ATGTVDGVDL KAGTVSLSHG
PIASLKWPAM TMEFKTANAA LLQALKPGAK VTVEFIERQP GEWVITSAKP ADPHAGQ
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