| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0411 |
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| Symbol | |
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| ID | 3962785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 417922 |
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| End bp | 421053 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637915244 |
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| Product | heavy metal efflux pump CzcA |
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| Protein accession | YP_521696 |
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| Protein GI | 89899225 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCTCCA GAATCATTGA CTGGTCAGGC CGCAACCGCT TTCTGGTGCT GCTGGCCACG
CTGTTCATCG TCGTTGGCGG CATCTTTGCC GTGCTGCGCA CGCCCATCGA TGCGCTGCCG
GACTTGTCGG ACGTGCAGGT CATCGTCTAC ACCGAGTACC CCGGCCAGGC GCCGCAGGTG
GTGGAAGACC AGGTCACCTA CCCGCTCACC ACGTCGATGT TGTCGGTACC CAAATCCAAG
GTGGTCCGCG GTTTCTCGTT CTTCGGCGCC TCCTTCGTCT ACATCATTTT TGAAGATGGA
ACCGACATCT ACTGGGCCCG CTCGCGGGTG CTGGAGTACC TCAATTTCGC CTCCGGGCGC
ATGCCCAAAG GCATCACGCC GCAGATCGGG CCTGATGCTA CGGGCGTGGG TTGGGTCTAT
CAGTACGCAC TGCTGGCCAA GGACAAGACA TTGGCCGAGT TGCGCAGCAT TCAGGACTGG
TATGTGCGCT ACCAGTTGAC CAAGGCGCAC GGTGTGGCGG AAGTGGCCTC GGTCGGTGGC
TTTGTGCAAA CCTACCAGGT GACGGTGGAC CCGGTGAAGC TGCGTGCCTA CGGCATCCCG
CTGATGAAAG TGGCGCAGGT CATTCGCGAC TCGAACCGCG ACGTGGGTGG GCGCGCCGTC
GAGATGGCCG AGACCGAGTA CATGGTGCGC GGCAAAGGCT ACCTCAGGGG CAAGGGCGAC
ATCGAGCTGC TGGTCGTCAA AAGCGACAAA GGCACGCCGG TGCTGATCCG CGACATCGCA
CGGGTCGAGC TGACACCGGA CGAGCGGCGC GGTTTGACGG AGCTCAACGG CGAAGGTGAG
GTGGTCTCGG GTATCGCCAT GTCCCGCTAC GGGCAGAACG CGCTGGAGGT GATCTCCAAC
CTGAAGGCCA AGATCGCCGA GATTGGCCCC GGCTTGCCCG CGGGTGTGAC GGTGCAAACC
GTCTATGACC GCTCCGAGCT GATCAACCGC GCCATCGACA CGCTCAAACG CACGCTGCTG
GAAGAGTCGC TGATCGTGGC TGTTGTGTGC GTCGTTTTTC TGATGCACGT GCGCAGTGCG
CTGGTCGCCA TCCTGATGCT GCCGGTGGGC ATCTTGATGG CCTTCATCGC CATGCGATTG
CTGGGCATGA GCTCCAATCT GATGAGCCTG GGCGGCATTG CGATTGCCAT CGGCGCCATG
ATCGACGCGG CCATCGTGAT GATCGAAAAC GCCCACAAGC ACCTGGAGCG CCTGCCTGAG
GACCACACCA AGCTACAGCG CTTTGAGGCC ATGCTGGAAG CGTGCAAAGA GGTGGGCCCG
GCGCTGTTTT TCTCGCTGCT GATCATCACG GTGTCGTTTT TGCCCGTGTT TGCGCTGGAA
GGGCAAGAAG GGCGCCTGTT CTCACCCCTG GCCTACACCA AGACCTTCTC CATGGCCAGC
GCCGCTCTGC TGTCCATCAC CCTGGTGCCG GTGCTGATGC TGCTGTTCAT TCGTGGCAAG
GTCATGCCGG AGGCCAGGAA CCCGGTCAAC CGCGCATTGA TTTGGGCCTA CCGCCCCATC
ATCGCGGGCG TGATGCGCTG GAAGAAATTG ACGATATTTC TGGCGCTGGT GGCCCTGGCT
GTCTCCTACT ACCCGGCCTC CAAATTGGGC TCCGAGTTCA TGCCCACGCT CAACGAGGGC
AGCTTGCTCT ACATGCCGGC CTCGCTGCCG GGCATGTCGA TCACCAAGGC CGCCGAGCTG
CTGCAAACAC AAGACAAGAT CATCAAGAGC TTCCCCGAAG TAACCTCGGT CTACGGCAAG
GCCGGACGCG CCAACACCGC GACCGACCCG GCCCCCACCG AGATGTTCGA GACCGTGATC
AACCTCAAAC CCGAATCCGA GTGGCGTGCA GGTTTAACGA TTGACAAGCT GATTGCCGAA
ATGGACAAAG CCTTGCAGTT CCCCGGTGTG GCCAACTCGT GGACCATGCC GATCAAGGCC
CGCATTGACA TGCTGTCCAC CGGCATCCGC ACGCCCATTG GCATCAAGGT CTTCGGCAAA
GATCTGGATG AGATGGAAAA ACTGGCGCGG CAAATTGAAG CTGTGGTGAA AACCGTTCCC
GGCACCAGCA GCGCCTTTGC CGAGCGCATC ACCGGGGGCT TCTACCTCAA TATTGAACCC
GACCGCGAGC AACTGGCGCG TTATGGCCTG AGCGTGGGCG ATTTACTTGA TGTGGTCGGC
ACGGCTCTCG GCGGCGAAAT GGTCACCACC ACGGTTGAGG GACGCGAGCG CTATGGCGTG
ACCGTGCGCT ATCCGCGCGA GTTGCGCTCT GACCCGCAAC AGATTGCCAC ACAAGTGCTG
GTGCCCACCA TGGAGGGCGC CATGATCCCG CTGGGCCAAC TGGCCAAGGT GATCGTCGCC
AAGGGGGCGC CCGGCATCCG CACCGAAAAC GCGTTGCTGT CGGCCTATAT CTACGTTGAC
ATTCGCGACC GCGACATCGG CAGCTATGTG CGTGACGCGA AGAAGGCCGT TGCAGAACAA
GTAAGCTTCC CCAGCGGCTA TTACGTCACC TGGAGCGGCC AGTTTGAAAA TATGGAGCGC
GCCCTTGAGA CGATGAAGAT CGTCATCCCG GTCACCCTGC TGTCGATCTT CATGCTGCTG
TACCTCAACT TCAGGCGCAT CACCGAAACG CTGATCGTGA TGCTCTCAGT GCCCTTCGCC
CTGGTCGGCG GCATCTGGCT GATGTGGGCG CTGGGCTACA ACCTGTCGGT GGCGGTGGCG
GTCGGCTTTA TTGCGCTGGC GGGCGTGGCG GCCGAGACCG GCGTCATCAT GCTGATTTAC
CTGGACCACG CTTGGGAAGA CGTGAAGGAT AAATGCCGCC AGTCCAACCG CGCGCCGACG
GTGACGGATC TGTACGGCGC CGTGATGGAA GGCGCCGTCG AGCGCGTGCG GCCCAAGATG
ATGACCGTCG TCGCCATCAT GGCCGGCCTG CTGCCCATCA TGTGGGGAAC CGGCACCGGC
TCCGAAGTGA TGAGCCGCAT CGCAGCGCCC ATGGTCGGCG GCATGATCTC CAGCACGGTG
CTGACGCTGG CGGTGATTCC GGCCATTTAC GCTCTGGTAA AGCAGTGGCG CCTGACGCGC
GGGATGGAAT AG
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| Protein sequence | MLSRIIDWSG RNRFLVLLAT LFIVVGGIFA VLRTPIDALP DLSDVQVIVY TEYPGQAPQV
VEDQVTYPLT TSMLSVPKSK VVRGFSFFGA SFVYIIFEDG TDIYWARSRV LEYLNFASGR
MPKGITPQIG PDATGVGWVY QYALLAKDKT LAELRSIQDW YVRYQLTKAH GVAEVASVGG
FVQTYQVTVD PVKLRAYGIP LMKVAQVIRD SNRDVGGRAV EMAETEYMVR GKGYLRGKGD
IELLVVKSDK GTPVLIRDIA RVELTPDERR GLTELNGEGE VVSGIAMSRY GQNALEVISN
LKAKIAEIGP GLPAGVTVQT VYDRSELINR AIDTLKRTLL EESLIVAVVC VVFLMHVRSA
LVAILMLPVG ILMAFIAMRL LGMSSNLMSL GGIAIAIGAM IDAAIVMIEN AHKHLERLPE
DHTKLQRFEA MLEACKEVGP ALFFSLLIIT VSFLPVFALE GQEGRLFSPL AYTKTFSMAS
AALLSITLVP VLMLLFIRGK VMPEARNPVN RALIWAYRPI IAGVMRWKKL TIFLALVALA
VSYYPASKLG SEFMPTLNEG SLLYMPASLP GMSITKAAEL LQTQDKIIKS FPEVTSVYGK
AGRANTATDP APTEMFETVI NLKPESEWRA GLTIDKLIAE MDKALQFPGV ANSWTMPIKA
RIDMLSTGIR TPIGIKVFGK DLDEMEKLAR QIEAVVKTVP GTSSAFAERI TGGFYLNIEP
DREQLARYGL SVGDLLDVVG TALGGEMVTT TVEGRERYGV TVRYPRELRS DPQQIATQVL
VPTMEGAMIP LGQLAKVIVA KGAPGIRTEN ALLSAYIYVD IRDRDIGSYV RDAKKAVAEQ
VSFPSGYYVT WSGQFENMER ALETMKIVIP VTLLSIFMLL YLNFRRITET LIVMLSVPFA
LVGGIWLMWA LGYNLSVAVA VGFIALAGVA AETGVIMLIY LDHAWEDVKD KCRQSNRAPT
VTDLYGAVME GAVERVRPKM MTVVAIMAGL LPIMWGTGTG SEVMSRIAAP MVGGMISSTV
LTLAVIPAIY ALVKQWRLTR GME
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