| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0407 |
|---|
| Symbol | |
|---|
| ID | 3962781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 413213 |
|---|
| End bp | 415174 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637915240 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_521692 |
|---|
| Protein GI | 89899221 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.255198 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAA CCTTAGAGAG CGTTTTTGGC TATCCGCAGT TTCGCCCCGG CCAGGAGGCG
GTGATCAGCG CGGTACTGGC GGGCCGATCC GCAGCGGCGA TTTTCCCCAC CGGCTCGGGC
AAATCGCTGT GTTACCAGTT GCCCGCGCTG CTGCTGCCGC ACCTGACGCT GGTGGTGTCG
CCCTTGCTGG CGCTGATGCA AGACCAGTTG GCTTATCTGA CGCGCCACGG CATCGCCGCC
GCCAGCATCG ATTCGGCGCA AAGTCGCGAG CAGACGCAAA GTGTGATGGC GCAAGCCCGC
ACCGGCCAAC TCAAGATTTT GATGATCTCG GTGGAGCGGC TCAAAAACGA GCGTTTTCGC
AATTTCATCG CGCAAGTGCC CATCTCCTTG CTGGTGGTCG ATGAAGCGCA CTGCATCTCG
GAGTGGGGTC ATAACTTTCG CCCGGACTAC CTCAAGCTGC CGCACTACCA GCGCCAGTTC
GGCATCCCGC AGACCCTGTT GCTGACCGCG ACCGCCACGC CGCCGGTGGT GGCTGACATG
CAAACCAGGT TTGCCATTGC GGCCCATGAT GTGGTGACCA CCGGCTTTTA CCGGCCCAAC
CTCCATTTGC TGGTGGAGGC CGTCAGCGGC CGGGACAAAC TGCAGCGGCT GCTTGAGTGG
CTGTCCATGC GCGCCAATCA GCCAACCATT GTCTATGTGA CCCTGCAAAA AACCGCCGAG
CAGGTAGCGC GGCACCTGAG CCAGCACGGC CTGGGCGCCC ACGCTTACCA CGCGGGCATG
CCGCACGAGC AGCGCGAATC GATCCAGAAA CAATTCATGG CCGGCCGCCT CAACTGCATC
GTCGCCGCCA TCGCCTTTGG CATGGGCATT GACAAAAGCG ACATCCGAAA CGTGGTGCAT
TTTGACCTGC CCAAGTCGAT CGAGGGCTAC AGCCAGGAGA TTGGTCGCGC GGGCCGCGAT
GGCCTGCCCT CCGACTGCCT GGCGCTGGCC AATCGCGACA GCCTGCAGGT GCTGGAGAAC
TTTGTCTATG GCGACACGCC CGAAGCCGGG GGCATCCGCT GCGTACTCGA TGAGATTCTG
GCCGTGGCGC CGGCCAAGCC CTGGGAGCTG AGCCTCAATG CCCTGTCAGA GCAAAGCAAC
ATTCGCCTGT TGCCGCTGAA AACCCTGCTG GTGCAGCTGG AGCTGCGCGG CATCATTGCC
TCGCGTTACG CCTATTTTGC CGAGTACCGG TTCAAATACC TGATGGAGCC CGAGGCCCTG
CTGGCGCACT TCAAGGGGGA ACGCCAGCAA TTTGTGCAGG CCATCCTGCG CTGCGCCAGA
CCGGCCCGCA CCTGGTGCAC GCTGGACTTC GAGGCGCTGT ACCAGACCTG CCAGGCCGAA
CACAGCCGGG TGGTCACGGC ACTGGACTAC CTGGCGGCCC AGGGCTGGAT CGAGCTTGAG
GCCAAACAAA TGACCGAGGT CTATGCGGTG CTGGCGCCGG GTTTTGATGC GCAAACGTTA
AGCCTGGAAC TGCTGGCCTA TTTTCAGGCC AAGGAACGCA GCGAAATTGC ACGCATCCAC
GCCATGCTGG CTTTTTTTGC CGGCGAGCAG TGCCTGAGCC AGCATCTCGC CGCTTATTTT
GGCGACAGCG CAGCGCCGCT GCAATGCGGG CATTGCTCGG TCTGCCACGG CCAGGTGGCG
CACTTGCCAG CACCCGCGCC ACGGGCAGCG CTGGCCGGGC AGAACTTTCC GGCCTTGTGT
GGCGACTTGA TGGCTCGCCA CCGGGCACTT GGCCCCAGCC CGATGAGCGC CGACAGTCTG
ACGCGCTTCT TGTGCGGCGT GGCCGCGCCG CTCTTGACCC AACTCAAGGC GCGCAGCCTG
GCGGGTTTCG CTGCGCTGGA AAACCACCCG TATGCCGAGG TGCGGCAATG GGTGGGGCAG
CAATTGGCCA ACCTTGAGCC AGGCCGGCCC CCAACTGATT AA
|
|---|
| Protein sequence | MQQTLESVFG YPQFRPGQEA VISAVLAGRS AAAIFPTGSG KSLCYQLPAL LLPHLTLVVS
PLLALMQDQL AYLTRHGIAA ASIDSAQSRE QTQSVMAQAR TGQLKILMIS VERLKNERFR
NFIAQVPISL LVVDEAHCIS EWGHNFRPDY LKLPHYQRQF GIPQTLLLTA TATPPVVADM
QTRFAIAAHD VVTTGFYRPN LHLLVEAVSG RDKLQRLLEW LSMRANQPTI VYVTLQKTAE
QVARHLSQHG LGAHAYHAGM PHEQRESIQK QFMAGRLNCI VAAIAFGMGI DKSDIRNVVH
FDLPKSIEGY SQEIGRAGRD GLPSDCLALA NRDSLQVLEN FVYGDTPEAG GIRCVLDEIL
AVAPAKPWEL SLNALSEQSN IRLLPLKTLL VQLELRGIIA SRYAYFAEYR FKYLMEPEAL
LAHFKGERQQ FVQAILRCAR PARTWCTLDF EALYQTCQAE HSRVVTALDY LAAQGWIELE
AKQMTEVYAV LAPGFDAQTL SLELLAYFQA KERSEIARIH AMLAFFAGEQ CLSQHLAAYF
GDSAAPLQCG HCSVCHGQVA HLPAPAPRAA LAGQNFPALC GDLMARHRAL GPSPMSADSL
TRFLCGVAAP LLTQLKARSL AGFAALENHP YAEVRQWVGQ QLANLEPGRP PTD
|
|---|
| |