| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0368 |
|---|
| Symbol | |
|---|
| ID | 3962495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 374558 |
|---|
| End bp | 376585 |
|---|
| Gene Length | 2028 bp |
|---|
| Protein Length | 675 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637915200 |
|---|
| Product | anaerobic ribonucleoside triphosphate reductase |
|---|
| Protein accession | YP_521653 |
|---|
| Protein GI | 89899182 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAA CAAAGCCACC CGTTTTCAGC CACATCATCA AACGCGACGG TGGCATCAAG
CCGTTTGACG GCGCCAAAAT AGCCCACGCC CTGGCACGCG CCGCCCAGGT CAGCGGTGAG
TTTGACGATA CCGAGGCGCA GCGACTGACC CACTACCTGG TGCTTCCAAA AATCAAGGTA
CACGGTCAAG TCACCCCGCA CATTGAGCAG ATTCAGGACG CGGTCGAATC TGCCCTGTTT
GACGCCGGTT ACCCCAAGAC GCTGCGCGCC TACATCGTTT ATCGCGAGCA GCACCACAAA
TTGCGCAGCG ATCGCAAAAC CCTGGTTGAT GTCGAGTCGA GCATGAACGA GTACCTGCAG
CAGTTGGACT GGCGCGTCAA CGCCAATGCC AACCAGGGCT ACTCGCTCGG TGGACTGATC
CTCAACGTCT CGGGCAAGGT CATTGCCAAT TACTGGCTCA ATCACGTCTA CCCGCCCGAA
GTCGGCGCCG CGCACCGCAG TGCGGCGATC CACATTCACG ACCTGGACAT GCTCGCCGGT
TATTGTGCGG GCTGGTCGCT GCGCACGCTG CTGCATGAAG GCCTGAATGG CGTGCCGGGC
AAGGTCGAAT CGGGGCCCCC GAAGCACCTG TCGAGCGCGG TCGGACAGAT CGTCAACTTC
CTGGGCACGC TGCAAAATGA GTGGGCCGGG GCGCAAGCCT TCAGTTCCTT CGACACCTAC
ATGGCACCTT ACGTCCGGCA GGACAAACTG AGCTACGACG AGGTCCGCCA GAGCCTGCAA
GAGCTGATCT ACAACCTCAA TGTGCCCTCG CGCTGGGGCA CGCAAACGCC TTTTACCAAC
CTGACCTTTG ACTGGGTCTG TCCGCAAGAC TTGCGCGAGC AAATTCCCGT GATTGCGGGA
AAGGAGATGG CGTTCAGCTA CGGTGAACTG CAGCCTGAGA TGGACATGAT CAACCGTGCC
TACATTGAAA TCATGATGGC CGGGGATGCC AAGGGGAGGG TGTTTACCTT CCCGATTCCG
ACCTACAACA TCACCGAAGA CTTTGACTGG TACAGCACCA ATGCGGAGCT GCTGTTCGAA
ATGACCGCCA AATACGGTTT GCCCTACTTC CAGAATTTCA TCAATTCGGA ACTCAAGCCC
AACATGATCC GCTCCATGTG CTGTCGCCTG CAGCTGGACC TGCGCGAGCT GCTCAAGCGC
GGCAACGGCC TGTTCGGCTC GGCCGAGCAG ACCGGCTCGC TCGGCGTGGT CACGATCAAC
TGCGCGCGCT TGGGGTATCT GCACCGCGGC GACGAAGCGG CCATGCTGGC GGCGCTTGAC
GCCCTGCTGG AACTCGGCCG CGACAGCCTG GAGATCAAGC GCAAGGTGAT CCAGCGCCAC
ATGGACAACG GCCTGTTCCC CTACACCAAG CGCTACCTGG GCACGCTGCG CAACCACTTC
TCCACGCTGG GGGTGAACGG TATCAACGAG ATGATCCGCA ACTTCACGCA GGACAAGTAC
GACATCAGCG GCGAGTGGGG TCACGCTTTT GCGGTGCGCC TGCTCGACCA TGTGCGCGCC
CGCATGCTCG AATTCCAGGA CCAGACCGGC CACATGTACA ACCTGGAGGC GACACCGGCC
GAAGGCACGA CCTACCGCTT TGCCAAGGAA GACGCCAAAC AGTTCCCGGA CATCCTGCAG
GCGGGCACCA AGGACATGCC CTACTACACC AACTCCAGCC AACTGCCGGT GGGCTTTACC
GACGATCCGT TTGAGGCGCT GGAACTGCAG GACGATCTGC AGCGCAAGTA CACCGGCGGC
ACCGTCTTGC ACCTGTACAT GACCGAGCCC CTGAGCAGCG CCGAGGCCTG CCGCCAACTG
GTCAAGCGTT CGCTGTCGCG TTTTCACCTG CCCTACATCA CCGTGACGCC CACCTTTTCG
ATCTGCCCGA AACATGGCTA CCTGGGCGGA CGGCATGACT TTTGCCCCAA ATGCGACGCC
GACCTCATTT CGCGCAAACA ACTCGAAACC AATACCCAAG GAGACTGA
|
|---|
| Protein sequence | MSATKPPVFS HIIKRDGGIK PFDGAKIAHA LARAAQVSGE FDDTEAQRLT HYLVLPKIKV
HGQVTPHIEQ IQDAVESALF DAGYPKTLRA YIVYREQHHK LRSDRKTLVD VESSMNEYLQ
QLDWRVNANA NQGYSLGGLI LNVSGKVIAN YWLNHVYPPE VGAAHRSAAI HIHDLDMLAG
YCAGWSLRTL LHEGLNGVPG KVESGPPKHL SSAVGQIVNF LGTLQNEWAG AQAFSSFDTY
MAPYVRQDKL SYDEVRQSLQ ELIYNLNVPS RWGTQTPFTN LTFDWVCPQD LREQIPVIAG
KEMAFSYGEL QPEMDMINRA YIEIMMAGDA KGRVFTFPIP TYNITEDFDW YSTNAELLFE
MTAKYGLPYF QNFINSELKP NMIRSMCCRL QLDLRELLKR GNGLFGSAEQ TGSLGVVTIN
CARLGYLHRG DEAAMLAALD ALLELGRDSL EIKRKVIQRH MDNGLFPYTK RYLGTLRNHF
STLGVNGINE MIRNFTQDKY DISGEWGHAF AVRLLDHVRA RMLEFQDQTG HMYNLEATPA
EGTTYRFAKE DAKQFPDILQ AGTKDMPYYT NSSQLPVGFT DDPFEALELQ DDLQRKYTGG
TVLHLYMTEP LSSAEACRQL VKRSLSRFHL PYITVTPTFS ICPKHGYLGG RHDFCPKCDA
DLISRKQLET NTQGD
|
|---|
| |