Gene Rfer_0352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_0352 
Symbol 
ID3962479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp352870 
End bp354039 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content55% 
IMG OID637915184 
Productextracellular solute-binding protein 
Protein accessionYP_521637 
Protein GI89899166 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000218396 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAAA AGTATCTATG GTCATTTGCG CTGTCTGCGC TGGTGTTGGC TGCTTGCGGA 
AAGAAAGAGG AGCCACCTGC GCCCGTGGCG GTACCCGCTA CGGTGGTGAG CGCGCCCGCA
CCGGTGGCGC AGAACAGCGA AGAAAAAGTC CTCAACATCT ACAACTGGCC TGACTACATC
CCTGAGGGCA TGATGGCTGC TTTCGAGAAA GAGAGCGGAA TCAAGGTCAA TTACGACACC
TTCGAGACCA ACGAAGCGCT GCATGCCAAG CTGGTGGCGG GCAACACCGG TTATGACATC
GTGGTGCCCG GCTCGGTGTT TGCCAAACCA CAGATCGAAG GCGGCATGTT CCAGCCCCTG
GACAAGGCCA AGATCAAGAA CCTGGGCAAC CTGGACTCAA ACATCATGGC CACGCTGGCT
AAAAACACCG ACCCCGGCAA CAAGTACCTG GTCCCCTGGG CCTGGGGCTT TACCACCGTG
GGCATCAACA AGACCAAGGT CGCCAAGGCG CTGGGCAAAA CACCCATGCC TGAAAACGCC
TGGGACCTGG TGTTCAAGCC CGAATACACC AGCAAGTTGA AATCCTGCGG TATTGCCTAC
CTGGATTCGC CTACCGAAAT CATCCCGGCG GCGTTGCACT ACATCGGCAA GGATGCGTAT
TCGAACGATC CGGCCGATTA CAAGCTCGCG AATGAGATGT TGGCCAAGGT GCGCAAAGAT
GTGCGCATTT TCAGCTCGAC CATGATCGAC GACATTGCTG GCGGCAAAGC CTGCGTGGCC
ATTGGGTGGT CGGGCGACAT CAACATCGCG GCAAATCGCG CCAAAGAAAA CAAGTCCAAA
GACGTCATCG AGTCGCTGTT GCCCAGCACC GGTGCACTGA TTTTCTTTGA CACCATGGCC
ATCACCAAAG ATGCCAAGCA CCCCAACAAC GCGCTGGCCT TCATCGACTT CTATCTGCGT
CCTGAAAACG CCGCTCGCAT GGCCAACGAA ATGAACTACC CGACGGCGAA CAAGGCAGCG
ATGGACAAAA TCAAGCCTGA AATTGCTGGC AACAAGACCA TTTTTGTTGA GTCAGACTAC
TTTGCCAAGA TGATTGCCCC GAGCAGCTTC ACCAATGAAG CACGCGAGGC CATGGCCACG
GTCTACAACA GCTTCAAAAA GGGCAAGTAA
 
Protein sequence
MMKKYLWSFA LSALVLAACG KKEEPPAPVA VPATVVSAPA PVAQNSEEKV LNIYNWPDYI 
PEGMMAAFEK ESGIKVNYDT FETNEALHAK LVAGNTGYDI VVPGSVFAKP QIEGGMFQPL
DKAKIKNLGN LDSNIMATLA KNTDPGNKYL VPWAWGFTTV GINKTKVAKA LGKTPMPENA
WDLVFKPEYT SKLKSCGIAY LDSPTEIIPA ALHYIGKDAY SNDPADYKLA NEMLAKVRKD
VRIFSSTMID DIAGGKACVA IGWSGDINIA ANRAKENKSK DVIESLLPST GALIFFDTMA
ITKDAKHPNN ALAFIDFYLR PENAARMANE MNYPTANKAA MDKIKPEIAG NKTIFVESDY
FAKMIAPSSF TNEAREAMAT VYNSFKKGK